Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 seq9 95.1 1e-14 >seq3 Length=527952102 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || ||||| ||||||||| | ||| |||||| Sbjct 475400143 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAAGTGGAGCCCAGT 475400202 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| |||||||||||| | ||| || || Sbjct 475400203 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400262 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| ||||| |||||||| |||| | || || | || |||||| Sbjct 475400263 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475400322 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || |||||||| || |||||| |||| Sbjct 475400323 ATCCAGAAAGAATCCACCTTGCACTTGGT 475400351 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || ||||| ||||| ||| | ||| |||||| Sbjct 475400827 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 475400886 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| |||||||||||| | ||| || || Sbjct 475400887 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400946 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| ||||| |||||||| |||| | || || | || |||||| Sbjct 475400947 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475401006 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || |||||||| || ||||| |||| Sbjct 475401007 ATCCAGAAAGAATCCACCCTGCACTTGGT 475401035 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || ||||| ||||| ||| | ||| |||||| Sbjct 475399915 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCCAGT 475399974 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| |||||||||||| | ||| || || Sbjct 475399975 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400034 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||||| || | ||| || || ||||| || |||| | || || | || |||||| Sbjct 475400035 CAGAGACTGATCTTTGCCGGGAAGCAGCTAGAAGATGGTCGTACCCTGTCTGACTACAAC 475400094 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || || |||||||| || ||||| |||| Sbjct 475400095 ATCCAGAAAGAATCCACCCTGCACTTGGT 475400123 >seq9 Length=79335909 Score = 95.1 bits (104), Expect = 1e-14 Identities = 217/324 (67%), Gaps = 7/324 (2%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || ||||| || || || ||| | || ||||| | ||| | || ||||| ||||| Sbjct 51694991 AGATCAGTTTCAGGATTCTCATACTCAGGACAGAGAACACATTTTTAAATGAATCCATCC 51694932 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 | || ||| || | |||| | || || || || ||||| ||| | | || || || Sbjct 51694931 AACATGTCTTGCAGCTTATTTGCCTCATGAGATCCATTGACAATGTAATGGTCATTCTTA 51694872 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 ||| | ||| || || || ||||||| || || || || || || || || | | Sbjct 51694871 ACATCAAACTGGGTCTGTGCTTCCAGCTCACAACCAAAATATTTGGTAGGATATGTTGGA 51694812 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || | ||||||||| | || ||||||||| || || ||||| || || || Sbjct 51694811 GGCTGATTAAGCGCCTTTACA---TCAACCATGTTGACTATAACTGTCTTAATTCCATTT 51694755 Query 34555 CCCTTTCCTTCGACCTTGGCG--CAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCG 34612 || || || || ||||| || |||| || || ||||||||||| |||||| || | Sbjct 51694754 CCTTTGCCCTCAACCTTAGCAATCAGA--CGGGGAATTTTGTAGCGATAGAACTGATCTG 51694697 Query 34613 CCACATTGCGGTTAACGTTCACAG 34636 ||| ||| ||| ||||| |||| Sbjct 51694696 AAACACTGCAGTTGACGTTGACAG 51694673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412816361960888