Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2 210 3e-48 >seq2 Length=541556283 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 494952134 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 494952075 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| | Sbjct 494952074 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAGT 494952015 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 494952014 GCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 494951955 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| ||||| |||| Sbjct 494951954 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGTGGACCTGCTTCAGCACTTTGT 494951895 Query 1485710 AAAC 1485713 | || Sbjct 494951894 AGAC 494951891 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 494970710 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCTCCGGGCA 494970769 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| | Sbjct 494970770 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAGT 494970829 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 494970830 GCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 494970889 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| ||||| |||| Sbjct 494970890 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGTGGACCTGCTTCAGCACTTTGT 494970949 Query 1485710 AAAC 1485713 | || Sbjct 494970950 AGAC 494970953 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||||||||| || || ||||||||| |||||| ||| ||| ||| Sbjct 251267626 TGTACTTGGTAACAGCCTTGGTACCTTCGGAAACGGCGTGCTTGGCCAATTCCCCGGGCA 251267567 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| | Sbjct 251267566 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 251267507 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||||||||| || || |||| Sbjct 251267506 GCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAAGAATTCA 251267447 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 251267446 TGATGCCCATAGCCTTGGACGAGATGCCCGTGTCCGGGTGGACCTGCTTCAGCACCTTGT 251267387 Query 1485710 AAAC 1485713 | || Sbjct 251267386 ACAC 251267383 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||||||||| || || ||||||||| |||||| ||| ||| ||| Sbjct 251292477 TGTACTTGGTAACAGCCTTGGTACCTTCGGAAACGGCGTGCTTGGCCAATTCCCCGGGCA 251292536 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| ||| ||||||||| | Sbjct 251292537 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 251292596 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||||||||| || || |||| Sbjct 251292597 GCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAAGAATTCA 251292656 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 251292657 TGATGCCCATAGCCTTGGACGAGATGCCCGTGTCCGGGTGGACCTGCTTCAGCACCTTGT 251292716 Query 1485710 AAAC 1485713 | || Sbjct 251292717 ACAC 251292720 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 258218351 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGGA 258218292 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| | || ||| ||| ||||||||| | Sbjct 258218291 GCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAAGTGATGGTGGAGCGCTTGTTGTAGT 258218232 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| ||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 258218231 GCGCCAGACGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 258218172 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 258218171 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGGACCTGCTTCAGCACCTTGT 258218112 Query 1485710 AAAC 1485713 | || Sbjct 258218111 ACAC 258218108 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 258242257 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGGA 258242316 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| | || ||| ||| ||||||||| | Sbjct 258242317 GCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAAGTGATGGTGGAGCGCTTGTTGTAGT 258242376 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| ||| |||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 258242377 GCGCCAGACGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 258242436 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| |||||||||| Sbjct 258242437 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGGACCTGCTTCAGCACCTTGT 258242496 Query 1485710 AAAC 1485713 | || Sbjct 258242497 ACAC 258242500 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || ||||||||| ||||||| || ||| ||| Sbjct 494992533 TGTACTTGGTGACGGCCTTAGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 494992592 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| | Sbjct 494992593 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTCGAGCGCTTGTTGTAGT 494992652 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| || || ||||| || ||||||| Sbjct 494992653 GCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGATATCATTGACGAAGGAGTTCA 494992712 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| ||||| |||||||| ||||| |||| Sbjct 494992713 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCAGGGTGGACCTGCTTCAGCACTTTGT 494992772 Query 1485710 AAAC 1485713 | || Sbjct 494992773 AGAC 494992776 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || ||||||||| |||||| ||| || ||| Sbjct 251246613 TGTACTTGGTAACAGCCTTAGTGCCCTCGGACACGGCGTGCTTGGCCAATTCCCCAGGCA 251246554 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||||||||| |||| ||| ||| ||||||||| | Sbjct 251246553 GCAGCAGGCGCACAGCAGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 251246494 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||||||||| || || |||| Sbjct 251246493 GCGCCAGGCGGGAAGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAAGAATTCA 251246434 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| || |||||| ||| ||||| |||||||| |||||||||| Sbjct 251246433 TGATGCCCATAGCCTTGGACGAAATGCCCGTGTCCGGGTGGACCTGCTTCAGCACCTTGT 251246374 Query 1485710 AAAC 1485713 | || Sbjct 251246373 ACAC 251246370 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| || ||||||||| |||||||||| ||| ||| Sbjct 494994926 TGTACTTGGTGACGGCCTTAGTGCCCTCCGACACGGCGTGCTTGGCCAGTTCCCCGGGCA 494994867 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||||||||| |||| ||| || ||||||||| | Sbjct 494994866 GCAGCAGGCGCACAGCCGTCTGGATCTCCCGGGATGTGATGGTCGAGCGCTTGTTGTAGT 494994807 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| |||||| || |||| || |||| ||||||||||| || ||||||| Sbjct 494994806 GGGCCAGGCGAGAAGCCTCGCTGGCGATACGCTCGAAGATGTCGTTGACGAAGGAGTTCA 494994747 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| || ||||| || ||||| ||||| |||| Sbjct 494994746 TGATGCCCATTGCCTTGGAGGAGATGCCGGTATCAGGGTGGACTTGCTTCAGCACTTTGT 494994687 Query 1485710 AAAC 1485713 | || Sbjct 494994686 AGAC 494994683 Score = 163 bits (180), Expect = 4e-34 Identities = 185/248 (75%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| || ||||| ||||| || ||||| ||| |||| || || || ||| Sbjct 251514247 TGTATTTGGTGACAGCTTTGGTGCCCTCAGACACGGCATGCTTGGCAAGCTCTCCCGGCA 251514188 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| | ||| || ||| ||||| Sbjct 251514187 GCAGCAGGCGCACGGCCGTCTGGATCTCTCGGGAGGTGATGGTAGAGCGTTTGTTGTAAT 251514128 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| | | ||||| |||| ||||||||||| || ||||||| Sbjct 251514127 GTGCCAGGCGGGACGCCTCGCCGGCTATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 251514068 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||||| ||| || || |||||||| | ||||||| Sbjct 251514067 TGATGCCCATGGCTTTGGATGAGATGCCTGTGTCAGGATGGACCTGCTTTAAAACCTTGT 251514008 Query 1485710 AAACAAAG 1485717 | ||| || Sbjct 251514007 ACACATAG 251514000 Score = 147 bits (162), Expect = 3e-29 Identities = 179/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || ||||| || |||||||| ||||||||| | |||| || ||| ||| Sbjct 251442886 TGTACTTTGTAACTGCCTTAGTGCCCTCTGACACGGCGTGCTTAGCCAACTCTCCGGGCA 251442945 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| || |||||||||||||||| ||| ||| ||| ||||| Sbjct 251442946 ACAGCAGACGCACAGCAGTCTGGATCTCGCGGGACGTGATAGTGGAGCGTTTGTTGTAAT 251443005 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||| |||| || |||| ||||||||||| || ||||||| Sbjct 251443006 GCGCCAGGCGGGAAGCCTCACCAGCGATACGCTCGAAGATGTCGTTGACGAAAGAGTTCA 251443065 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||| ||| || || || |||||||| || || |||| Sbjct 251443066 TGATGCCCATAGCCTTGGACGAGATACCCGTATCAGGATGGACCTGCTTCAGTACTTTGT 251443125 Query 1485710 AAAC 1485713 | || Sbjct 251443126 ACAC 251443129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915712825202024