Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 8e-16 seq2 86.0 5e-12 seq1 82.4 6e-11 >seq3 Length=527952102 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||||||| | ||| |||| | | Sbjct 475400143 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAAGTGGAGCCCAGT 475400202 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || |||||| || ||||||||| | ||| || ||| Sbjct 475400203 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400262 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| ||||| |||||||| || | || || | ||||||||| Sbjct 475400263 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475400322 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || || || || || |||||| |||| Sbjct 475400323 ATCCAGAAAGAATCCACCTTGCACTTGGT 475400351 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || || || ||||| ||||| ||| | ||| |||| | | Sbjct 475400827 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 475400886 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || |||||| || ||||||||| | ||| || ||| Sbjct 475400887 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400946 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| ||||| |||||||| || | || || | ||||||||| Sbjct 475400947 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475401006 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || || || || || ||||| |||| Sbjct 475401007 ATCCAGAAAGAATCCACCCTGCACTTGGT 475401035 >seq2 Length=541556283 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || || || ||||| ||||||||| | ||| || | | Sbjct 204602194 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 204602135 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||| || ||||||||| | ||| || ||| Sbjct 204602134 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 204602075 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || |||||||| || | || || | ||||||||| Sbjct 204602074 CAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 204602015 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || ||||| || || || ||||| |||| || | || |||||| Sbjct 204602014 ATCCAAAAAGAATCCACCCTGCACTTGGTCCTGCGCTT--GAGGGG 204601971 >seq1 Length=748055161 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/219 (68%), Gaps = 7/219 (3%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || || || || || ||||| ||| | ||| |||| | | Sbjct 466159463 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATCACCCTTGAAGTGGAGCCCAGT 466159522 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || |||||| || |||||| || | ||| |||| || Sbjct 466159523 GACACTATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAATGCATTCCCCTGGAGTAG 466159582 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| ||||||||||| || | ||| || | ||||||||| Sbjct 466159583 CAGAGACTGATCTTTGCTGGTAAACAGCTAGA------TATAAC-CTGTCTGACTACAAC 466159635 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTG 107774 || || || || || || || || |||| ||| | ||| Sbjct 466159636 ATCCAGAAAGAATCCACCCTGTACTTGGTCTTGTGCTTG 466159674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398852415664024