Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1 109 9e-19 seq3 91.5 2e-13 seq2 86.0 1e-11 >seq1 Length=748055161 Score = 109 bits (120), Expect = 9e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || |||||||| || || || || || || || ||| |||| || |||| || Sbjct 532227480 TGCAGATTTTCATAAAGACTTTGACGGGGAAGACCATCACTCTTGAGGTTGAACCGTCCG 532227539 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| || || |||||| ||| ||||| ||||| || ||||||| Sbjct 532227540 ATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCTCCTGATCAAC 532227599 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 ||||| | |||||||| || || || || || ||| Sbjct 532227600 AAAGATTGATTTTTGCTGGCAAGCAGTTGGAAGAT 532227634 >seq3 Length=527952102 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || || || || || ||||| |||| ||||||| | | Sbjct 475400372 TGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGTG 475400431 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || || ||| ||||||||||| || || || || | Sbjct 475400432 ACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAGC 475400491 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| ||||| || |||| ||| | | || | | || || || | Sbjct 475400492 AGAGACTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAACA 475400551 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || |||||||| ||| | || ||||| Sbjct 475400552 TCCAGAAAGAATCAACTCTTCACTTAGT 475400579 >seq2 Length=541556283 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || || || || || ||||| |||| ||||||| | | Sbjct 204602193 TGCAGATATTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGTG 204602134 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || || ||| ||||||||||| || || || || | Sbjct 204602133 ACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAGC 204602074 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || ||||| || || || | || ||| | | || | | || || || | Sbjct 204602073 AGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAACA 204602014 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | ||||||||||| || | || || || | || || || |||||| Sbjct 204602013 TCCAAAAAGAATCCACCCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 204601967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786117107366720