Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 >seq3 Length=527952102 Score = 127 bits (140), Expect = 2e-24 Identities = 666/1058 (63%), Gaps = 35/1058 (3%) Strand=Plus/Plus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || || || || | ||| |||| | |||||| ||| | Sbjct 478411758 ATGCCTTCTATGTTGCTGACCTCGGTGACATCCTAAAGAAACATCTGAGATGGTACAAAG 478411817 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGAG---TCC 20321 || | ||| ||| | ||| ||||| || ||||| || ||| |||| | Sbjct 478411818 CTCTTCCTCGAGTAACTCCTTTTTATGCTGTTAAATGT---AATGACAGCAGAGCTATAT 478411874 Query 20322 TCAAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGT 20381 | ||||| || ||||| | | | || ||||| ||||| || ||| || || || | Sbjct 478411875 TGAAGACACTTGCTGCAGTAGGAGCAGGATTTGATTGTGCTAGCAAGACTGAAATACAAT 478411934 Query 20382 TACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGC 20441 || | || | ||| || || | ||| |||||| | | ||| ||||| || || || Sbjct 478411935 TAGTACAGAGTCTTGGGGTGCCACCAGGGAGGATAATCTATGCAAATCCATGCAAACAAG 478411994 Query 20442 CTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAG 20501 || || || | |||||| || | | ||||||| ||||||||||||||||||||| Sbjct 478411995 TGTCACAAATTAAGTATGCTGCCAACAATGGAGTACAAATGATGACTTTTGATAGTGAAG 478412054 Query 20502 AAGAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAG 20561 |||| | | ||| ||| | || | | || ||||| || | || ||| Sbjct 478412055 TAGAGTTAATGAAAGTTGCCAGAGCTCATCCAAAGGCAAAGCTTGTTTTAAGTATTGCCA 478412114 Query 20562 TGGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCA 20621 |||||||| || | | | | || ||||| || ||||| || || | || | | Sbjct 478412115 CTGATGACTCCAAAGCTGTCTGTCGTCTAAGTGTTAAATTTGGTGCCACTCTCAAAACTA 478412174 Query 20622 GCCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCC 20681 | | || || | | ||| || || | | || || || |||||||| |||| Sbjct 478412175 GTAGGCTACTCCTTGAGCGGGCAAAGGAACTGAATATTGATGTTATTGGAGTCAGTTTCC 478412234 Query 20682 ACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGA 20741 | ||||| ||||| || | ||| || | | | |||| | |||| || | Sbjct 478412235 ATGTGGGAAGTGGTTGTACTGATCCAGAAACATTTGTCCAAGCAGTCTCTGATGCTCGAT 478412294 Query 20742 GAGCTTTTGACTTTGGCACGCTGATGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | | |||||| | || | | | || || ||||||| || | ||||||||||| | Sbjct 478412295 GTGTCTTTGACATGGGGGCAGAGTTTGGTTTCAACATGTATCTTCTTGATATTGGTGGTG 478412354 Query 20802 GCTTTCCCGGGATCAATGAGATTGAGCCAACTTTTGAGGACATTGCAGAAGTCATTAACG 20861 ||||||| || | || | ||| | ||||| || || || || || || Sbjct 478412355 GCTTTCCTGGTTCTGAAGATGTAAAGCTTAAATTTGAAGAGATCTCAAGTGTAATCAATC 478412414 Query 20862 CGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTGGCA 20921 | || ||||| | | ||||||| ||| | || ||| || | ||||||||||| Sbjct 478412415 CAGCATTGGACAAGTATTTTCCTCCTGACTCTGGAGTGCGAATCATAGCTGAACCTGGCA 478412474 Query 20922 GGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTGTGT 20979 | ||||| | | | || || | || | || || | | ||||| ||||| ||| | Sbjct 478412475 GATACTATGTTGCATCAGCTTTCACGCTTGCAGTTAACATCATTGCCAAAAAACTTGTAT 478412534 Query 20980 TGA------AGACA--CTC-----CTGGAGAT-----AAA-------AAGTTTATGTATT 21014 | | ||||| ||| || |||| ||| | |||||||| | Sbjct 478412535 TAAAAGAACAGACAGGCTCTGATGATGAAGATGAGGCAAATGACCAGACCTTTATGTACT 478412594 Query 21015 ATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGTCCTA 21074 |||| |||||||| || ||||| ||||| || || ||||| | ||||| | | || Sbjct 478412595 ATGTAAATGATGGAGTATATGGATCATTTAATTGTATCCTATTTGATCATGCACATGTTA 478412654 Query 21075 TGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCATTTGG 21133 ||| | || | || | | || || || || | || ||||||||| ||| Sbjct 478412655 AACCTCTTCTACAGAAGCGGCCCAAACC-AGATGAGAAGTATTACTCTTCTAGCATATGG 478412713 Query 21134 GGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGCTTCAA 21193 || || | || |||||| | ||| | ||||| | || ||||| | ||||| | || Sbjct 478412714 GGACCAACATGTGATGGCCTCGATCGAATTGTCGAACGCTGTGATTTACCAGAAATGCAT 478412773 Query 21194 GTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTA 21231 ||||| || ||| | | |||||||||||||||||||| Sbjct 478412774 GTGGGAGATTGGATGCTGTTTGAAAACATGGGCGCTTA 478412811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463516535690880