Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq2 105 1e-17 >seq2 Length=541556283 Score = 105 bits (116), Expect = 1e-17 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||| | || | |||||||||| | | || ||||| | ||||| || |||||||| Sbjct 334509503 GATAGCTGGGGCTCTGTGGTGGTACTTTGTGTCAAAAGGAGTTGAATATTTGGATACAGT 334509444 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTC-TACACGTATATCATCATT 58487 || ||||| || ||||| || || || || | ||||| | || || |||||||| | Sbjct 334509443 ATTCTTCATTCTGAGGAAGAAAAACAACCAAGT-ATCTTTCCTTCATGTGTATCATCACT 334509385 Query 58488 TTACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 |||||||||||| || | ||| | || ||||||||| | |||||||| || Sbjct 334509384 GTACTATGTTTACATTGTGGTGGATTGGCATTAAATGGGTAGCAGGAGGACA 334509333 Score = 89.7 bits (98), Expect = 9e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 58100 GATAAACGTGTAGATAATTGGTTGTTAATGAATTCTCCTATTCCTACGATATGTATAAGT 58159 ||||||||||| || || ||| ||||| | ||||| | ||||| ||||||||||| Sbjct 334533330 GATAAACGTGTTGAGAACTGGCCTCTAATGCAGTCTCCATTGCCTACATTATGTATAAGT 334533271 Query 58160 ACTTTGTATCTAATCATCGTCTGGTTAGGACCTAAATGGATGAAAACTAGAAACGCGTTT 58219 ||| | ||||| || | |||||| | || |||||||||||||| | ||| | | || Sbjct 334533270 ACTCTTTATCTCCTCTTTGTCTGGCTGGGCCCTAAATGGATGAAGAACAGAGAACCTTTC 334533211 Query 58220 AATATCAGATGGTTGTTGGTCTTATATAATTTTTCTATGGTATTTCTAAACTTTTATAT 58278 | || | | ||||| | | ||||||||| ||||| || || ||| | | ||| Sbjct 334533210 CAGATGCGTTTAGTGTTGATTGTCTATAATTTTGGAATGGTTTTACTTAACATGTTTAT 334533152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903354556117760