Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 seq3 138 1e-27 >seq2 Length=541556283 Score = 143 bits (158), Expect = 3e-29 Identities = 404/617 (65%), Gaps = 9/617 (1%) Strand=Plus/Minus Query 176976 ACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAGT 177035 || |||||||||| ||||||||| | |||| || || || || || |||| || || Sbjct 356739537 ACATGAATGAAAGAGTCTCCCGGAATAAAATTCTCATAGTTTTCCCTTGATGGACCTAGA 356739478 Query 177036 ACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCTG 177095 || | || || | ||| |||| ||| | |||||||||||| || || || || || Sbjct 356739477 ACGACAGGGACTGTACCAGCCAGAAGGGCATTGTAGAGTTTTTCCGTGATGTAATCTTTG 356739418 Query 177096 TGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATA--GTAGCGGGATGAAGT 177153 || | || || ||||| | || || || ||||| ||||||| ||| || || || | Sbjct 356739417 TGGATCGAATTTTCAAAGGAAAGGTAAAACTTACAAGAAGATATGGTA--GGAATCAAAT 356739360 Query 177154 CATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTAC 177213 | ||| | ||| ||||| | | | | ||||| || || || ||| ||| | Sbjct 356739359 TTTTATCATTCAGATACTCTCCAAATGCTTGTCCGTAGGTATTAATTTCAATGCTTTTGC 356739300 Query 177214 TGAGCTCTAGGTAGTATCTCGATCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAGC 177273 | ||||| ||| ||| | ||| | || || ||||| || ||||| ||||||| Sbjct 356739299 TTAGCTCGCTGTAATATTTGACTCTTGCATGCTCAGGATTCCAGTTACTGACAACCCAGC 356739240 Query 177274 AAACTAACTTGCTCTTTGCGGGAACGGGATTC-GATACTAATGCAGTGTCTCTGAGCGTT 177332 | || | ||| |||| || || ||| | || | | | | |||| | | Sbjct 356739239 ACACCAGCTTCTTCTTGCTTGGCAC----TTCAAACACAAGAGAATTTGTGCTGACCTTC 356739184 Query 177333 AGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAA 177392 | || || || ||||| || ||||| ||||| || | || || | || |||||||| Sbjct 356739183 ATGGAGCCGTAAGGCACTTGTATATCTGAGTCTCGGCGATAAGTCAGAGTTAGATTGAAG 356739124 Query 177393 AGGTTTTCTATACCTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATC 177452 |||| ||| || || || || ||| | || ||||| ||||||||||| ||| Sbjct 356739123 AGGTGTTCAATGCCACTCTTCTGCGGTGTGTGGGTAGGAGATTCCAAGTTCATCCAAATC 356739064 Query 177453 CACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTATCTCT 177512 ||||| || || | |||||| | | | |||| | || |||| ||| || ||| Sbjct 356739063 CACTTCTGGAATGGTGGTCTAGCCTGCTGGGGTAAATTAGTTAGATCCCAACTGATGTCT 356739004 Query 177513 CTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTACGGTAACGTGA 177572 | || |||| | || |||| || ||||| |||| | || ||| ||| | ||| Sbjct 356739003 CGATGATGAATCAGAACAGCATGGGATTTGTTGTAAAGCGCTCGATCTGTGGTGAGATGA 356738944 Query 177573 CACGCACGTATGTTAAA 177589 ||| || | |||||||| Sbjct 356738943 CACCCATGGATGTTAAA 356738927 >seq3 Length=527952102 Score = 138 bits (152), Expect = 1e-27 Identities = 403/617 (65%), Gaps = 9/617 (1%) Strand=Plus/Plus Query 176976 ACGTGAATGAAAGCGTCTCCCGGGACGTAATTTTCGTAATTCTCTCTCGATGTTCCGAGT 177035 || |||||||||| ||||||||| | |||| || || || || || |||| || || Sbjct 288162765 ACATGAATGAAAGAGTCTCCCGGAATAAAATTCTCATAGTTTTCCCTTGATGGACCTAGA 288162824 Query 177036 ACTATGGGTACCGCACCTGCCATAAGAGATCGGTAGAGTTTTTCGGTAATATAGTCCCTG 177095 || | || || | ||| |||| ||| | |||||||||||| || || || || || Sbjct 288162825 ACGACAGGGACTGTACCAGCCAGAAGGGCATTGTAGAGTTTTTCCGTGATGTAATCTTTG 288162884 Query 177096 TGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAGATA--GTAGCGGGATGAAGT 177153 || | || || ||||| | || || || ||||| ||||||| ||| || || || | Sbjct 288162885 TGGATCGAATTTTCAAAGGAAAGGTAAAACTTACAAGAAGATATGGTA--GGAATCAAAT 288162942 Query 177154 CATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTAC 177213 | ||| | ||| ||||| | | | | ||||| || || || ||| ||| | Sbjct 288162943 TTTTATCATTCAGATACTCTCCAAATGCTTGTCCGTAGGTATTAATTTCAATGATTTTGC 288163002 Query 177214 TGAGCTCTAGGTAGTATCTCGATCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAGC 177273 | ||||| ||| ||| | ||| | || || ||||| || ||||| ||||||| Sbjct 288163003 TTAGCTCACTGTAATATTTGACTCTTGCATGCTCAGGATTCCAGTTACTGACAACCCAGC 288163062 Query 177274 AAACTAACTTGCTCTTTGCGGGAACGGGATTC-GATACTAATGCAGTGTCTCTGAGCGTT 177332 | || | ||| |||| || || ||| | || | | | | |||| | | Sbjct 288163063 ACACCAGCTTCTTCTTGCTTGGCAC----TTCAAACACAAGAGAATTTGTGCTGACCTTC 288163118 Query 177333 AGTGATCCATAGGGCACGTGAATATCCGAGTCGCGTCTGTACGTTAACGTGAGATTGAAA 177392 | || | || ||||| || ||||| ||||| || | || || | || |||||||| Sbjct 288163119 ATCGAGCGGTAAGGCACTTGTATATCTGAGTCTCGGCGATAAGTCAGAGTTAGATTGAAG 288163178 Query 177393 AGGTTTTCTATACCTTGTTTGAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATC 177452 |||| ||| || || || || ||| | || ||||| |||||||| || ||| Sbjct 288163179 AGGTGTTCAATGCCACTCTTCTGCGGTGTGTGGGTAGGAGATTCCAAGTTCATTCAAATC 288163238 Query 177453 CACTTTTGAAAGGTTGGTCTGGGTTCCGTAGGTAGAGTATAAGGATCTATACTTATCTCT 177512 ||||| || || | |||||| | | | |||| | || |||| ||| || ||| Sbjct 288163239 CACTTCTGGAATGGTGGTCTAGCCTGCTGGGGTAAATTAGTTAGATCCCAACTGATGTCT 288163298 Query 177513 CTGTGGTGAAAGACTACGGCATTGGCTTTGTAATAAACAGATCTGTCTACGGTAACGTGA 177572 | ||||||| | || |||| || ||||| |||| | || ||| ||| | ||| Sbjct 288163299 CAATGGTGAATCAGGACAGCATGGGATTTGTTGTAAAGCGCTCGATCTGTGGTGAGATGA 288163358 Query 177573 CACGCACGTATGTTAAA 177589 ||| || | |||||||| Sbjct 288163359 CACCCATGGATGTTAAA 288163375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578395732313600