Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1 107 5e-18 seq7 98.7 2e-15 >seq1 Length=748055161 Score = 107 bits (118), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| | || || ||| || || || | ||| || ||| Sbjct 532227503 ACGGGGAAGACCATCACTCTTGAGGTTGAACCGTCCGATACTATTGAAAATGTCAAGGCC 532227562 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| ||| || || |||||| | || || || || ||| Sbjct 532227563 AAGATACAAGATAAGGAAGGTATTCCTCCTGATCAACAAAGATTGATTTTTGCTGGCAAG 532227622 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||||||||||||||| | ||||| | | |||||| | ||||| |||||||| ||||| Sbjct 532227623 CAGTTGGAAGATGGACGTACTTTATCTGCCTACAACATTCAGAAGGAGTCTACCCTTCAT 532227682 Query 206374 CTTGTTTTGAGACTTCG 206390 |||||| |||| ||||| Sbjct 532227683 CTTGTTCTGAGGCTTCG 532227699 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| |||| |||||| ||||| |||||||| ||||| | || ||| ||| ||||| Sbjct 532227699 CGAAGCCTCAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGGCAGATAAAGTA 532227640 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||||||||| |||||| || || || || | | ||||||| Sbjct 532227639 CGTCCATCTTCCAACTGCTTGCCAGCAAAAATCAATCTTTGTTGA 532227595 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || |||| | | | || || |||||| | || || || || ||| Sbjct 723259571 AAGATACAAGATAAGGAAGTATTCCT-CCTGATCAACAAAGATTGATTTTTGCTGGCAAG 723259629 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| ||||| | || |||||| | ||||| |||| ||| ||||| Sbjct 723259630 CAGTTGGAAGATGGGCATACTTTATCTGACTACAACATTCAGAAGGAGTATACCCTTCAT 723259689 Query 206374 CTTGTTTTGAGACTTC 206389 |||||| |||| |||| Sbjct 723259690 CTTGTTCTGAGGCTTC 723259705 >seq7 Length=260857928 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| || || |||||| | | || || ||||| || | ||| || ||| Sbjct 194049476 ACAGGGAAGACCATCACTCTTGTGGTCAAACTGTCTGATACTATTGAAAATGTCAAGGCC 194049535 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| ||| || || |||| | | ||||| || || ||| Sbjct 194049536 AAGATACAAGATAAGGAAGGTATTCCTCCTGATCAACAAAAATTGATCTTTGCTGGCAAG 194049595 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| ||||| | || |||||| | ||||| ||||| || ||||| Sbjct 194049596 CAGTTGGAAGATGGGCATACTTTATCTGACTACAACATTCAGAAGGAGTCCACCCTTCAT 194049655 Query 206374 CTTGTTTTGAGACTTCG 206390 |||||| |||| ||||| Sbjct 194049656 CTTGTTCTGAGGCTTCG 194049672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181744847331736