Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 seq6 105 6e-18 seq2 93.3 4e-14 seq1 87.8 2e-12 seq9 82.4 7e-11 >seq3 Length=527952102 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || ||||| || ||||||||||| || |||||| |||||| Sbjct 475400351 ACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 475400292 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||||| | |||| || | ||| || ||||| || ||||||||||| || Sbjct 475400291 AGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGG 475400232 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | || | ||||| | ||||||||||| | || | || || Sbjct 475400231 ATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCACTTCAAGGGTAATGGTCTTG 475400172 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || | || |||||||| Sbjct 475400171 CCAGTCAGGGTCTTCACAAAGATCTGCAT 475400143 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | | || |||||||| ||||||||||| || |||||| Sbjct 475401273 CAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTACG 475401214 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || |||||||| |||||||| Sbjct 475401213 ACCATCTTCCAGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGGATGCCTTC 475401154 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || ||| || | | || | || || | || || ||||| | || Sbjct 475401153 TTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGT 475401094 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || |||||||| || || | || |||||||| Sbjct 475401093 GATGGTCTTGCCAGTCAGGGTCTTCACAAATATCTGCAT 475401055 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || ||||| || ||||||||||| || |||||| |||||| Sbjct 475400123 ACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCT 475400064 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| || | ||| || ||||| || ||||||||||| || Sbjct 475400063 AGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGG 475400004 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | || | ||||| | ||||||||||| | || | || || Sbjct 475400003 ATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCACTTCAAGGGTGATGGTCTTG 475399944 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 |||||||| || || | || ||||||||| Sbjct 475399943 CCAGTCAGGGTCTTCACAAAGATCTGCATG 475399914 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || ||||| || ||||||||||| || |||||| |||||| Sbjct 475401035 ACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 475400976 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||||| | |||| || | ||| || ||||| || ||||||||||| || Sbjct 475400975 AGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGG 475400916 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | || | ||||| | ||||||||||| | || | || || Sbjct 475400915 ATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 475400856 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||||| || || | || ||||||||| Sbjct 475400855 CCAGTCAAGGTCTTCACAAAGATCTGCATG 475400826 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || ||||| || ||||||||||| || |||||| |||||| Sbjct 475400807 ACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCT 475400748 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||||| | |||| || | ||| || ||||| || ||||||||||| || Sbjct 475400747 AGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 475400688 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| || | | || | || || | || || ||||| | || | |||||| Sbjct 475400687 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTTTTA 475400628 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||||| || || | || ||||||||| Sbjct 475400627 CCAGTCAAGGTCTTCACAAAGATCTGCATG 475400598 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | || ||||| || ||||||||||| || ||| ||| |||||| Sbjct 475399895 ACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGACAAGGTTCGCCCATCTTCT 475399836 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | | ||| || ||||| || |||||||| || || Sbjct 475399835 AGCTGCTTCCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGG 475399776 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | ||||| | ||||||||||| | || | || || Sbjct 475399775 ATTTTAGCCTTGACATTCTCAATGGTATCACTGGGCTCCACTTCAAGGGTGATGGTCTTG 475399716 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | || |||||||| Sbjct 475399715 CCAGTCAAGGTCTTCACAAAGATCTGCAT 475399687 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||| || ||||||||||| || ||| || |||||| ||||| ||||||| Sbjct 475400566 TTGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCTAGCTGCTTACCGG 475400507 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| || | ||| || ||||| || ||||||||||| || || ||| || | Sbjct 475400506 CAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGA 475400447 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | || || | || || ||||| | || | || || ||||||| || | Sbjct 475400446 CATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCT 475400387 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| |||||||| Sbjct 475400386 TCACGAAGATCTGCAT 475400371 >seq6 Length=292091736 Score = 105 bits (116), Expect = 6e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | | || |||||||||||||||||||| || |||||| Sbjct 193103649 CAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGAATGTTGTAGTCAGACAGGGTACG 193103590 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| || |||||||| |||||||| Sbjct 193103589 ACCATCTTCTAGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGGATGCCTTC 193103530 Query 132025 TTTATC 132030 ||| || Sbjct 193103529 TTTGTC 193103524 >seq2 Length=541556283 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | | || |||||||| ||||||||||| || |||||| Sbjct 204601976 CAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAGGGTACG 204602035 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | | |||| || | ||| || ||||| || |||||||| Sbjct 204602036 ACCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTC 204602095 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || ||| || | | || | || || | || || ||||| | || Sbjct 204602096 TTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGT 204602155 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||||| || || | || |||||||| Sbjct 204602156 AATGGTCTTGCCAGTCAAGGTCTTCACAAATATCTGCAT 204602194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 ||||||| ||||| || | | | || |||||||| |||||||||| || |||||| Sbjct 230790942 AAGCGCAGGACCAAGTGCAGGATAGATTCTTTTTGGATGTTGTAGTTAGACAGGGTACGA 230791001 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||| || |||| | |||| || | ||| || |||| ||| ||||||||| Sbjct 230791002 CCATCTTCCAGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGCAGGGATGCCTTCT 230791061 Query 132026 TTATC 132030 || || Sbjct 230791062 TTGTC 230791066 >seq1 Length=748055161 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 || ||| | ||| | | | ||||| || |||||||||||| | | ||||| ||| Sbjct 532227691 CAGAACAAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGGCAGATAAAGTACGTCCATC 532227632 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| | ||| || || | | | || | | |||||||| ||||| || ||||| ||||| Sbjct 532227631 TTCCAACTGCTTGCCAGCAAAAATCAATCTTTGTTGATCAGGAGGAATACCTTCCTTATC 532227572 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| | |||||||| ||| || || || | || | || Sbjct 532227571 TTGTATCTTGGCCTTGACATTTTCAATAGTATCGGACGGTTCAACCTCAAGAGTGATGGT 532227512 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||| ||| ||||||||||||||||| Sbjct 532227511 CTTCCCCGTCAAAGTCTTTATGAAAATCTGCAT 532227479 >seq9 Length=79335909 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||||| || ||||| || | | | || |||||||| ||||||||||| || | | | Sbjct 56184786 CAAGCACAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGACAGGATGCA 56184845 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 || ||| |||| ||||| | | |||| || | ||| || |||||||| |||||||| Sbjct 56184846 ACCATATTCTAGCTACTTACCAGCAAAGATCAGTCTCTGCTGGTCTGGAGGGATGCCTTC 56184905 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || ||| || | | || | ||||| | ||||||||||| | || Sbjct 56184906 TTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCACTTCCAAGGT 56184965 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || |||||| || || | || |||||||| Sbjct 56184966 GATAGTCTTGTCAGTCAAGGTCTTCACAAAGGTCTGCATG 56185005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476581316477760