Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5 212 7e-50 seq3 149 7e-31 seq8 91.5 2e-13 seq2 89.7 6e-13 >seq5 Length=304825324 Score = 212 bits (234), Expect = 7e-50 Identities = 428/631 (68%), Gaps = 12/631 (2%) Strand=Plus/Plus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCC 146928 ||||||||||||||| || || | || | || || ||||||||||| || ||||| Sbjct 43288146 AATCTTGAGCTTGGGAAAAGGCCTTGGTT--CTCGCTGAAGCTGAATTTTTAGTGGCTCA 43288203 Query 146929 ACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGG 146988 | || || || || || || || ||||| | ||| ||||| || || ||||| ||| Sbjct 43288204 ATATGATTCTCATATACATGAGCATCTCCCAGAGAGTGTACAAAATCACCTGGCTTCAGG 43288263 Query 146989 CCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACC 147048 || || | ||| || | ||||||||||||||| ||||| ||||| ||| |||| || ||| Sbjct 43288264 CCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGGTGAACGGCACC 43288323 Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACG 147108 || |||||||| || || || | ||| || ||||| || || | ||| || | || ||| Sbjct 43288324 CCAAGGCCCATATCTCCGGATCGCTGCTATAGCTGACAGGAAAACTCACCATTTGCTACG 43288383 Query 147109 TAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTC 147168 || ||||| || || ||||||| | |||| |||||| || || || || || Sbjct 43288384 TAGAACTGACAGAGAGCGTGGCACAGAGGCAAGGCCATGAGAGGAAGATCTTTTGGACTC 43288443 Query 147169 CAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCAC 147228 || || | | | | || ||| || ||||| | || || | ||||| || Sbjct 43288444 CAAGCACACATAATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCGATGACTTTT 43288503 Query 147229 CTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCA 147288 ||| | |||| || || || || | ||| || ||| |||||| Sbjct 43288504 TGTAGCAGACCCACTCCTTGCCCAGAATAATCTGTGTTCATCTCTTTGTATTCTGCCCCA 43288563 Query 147289 AAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAG 147348 || || |||||||||||| | ||||||| |||| | || |||| || | |||| Sbjct 43288564 AAATGTCTCCACTGGAAGGCACACACTGGTCCCAAACCTCC--TTCTTCTCTGAGTGAAG 43288621 Query 147349 CCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTG 147405 | || | ||| | || || | ||||| | ||| |||||||| || |||||| Sbjct 43288622 C---CCAGATTGTCCAAAAGTTCACGTGACCCATTGGCATCCCAGATCGTCATCCCCTTG 43288678 Query 147406 GCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACC 147465 ||||||||||||||| | ||| | |||| || ||||| ||||| ||||||| || Sbjct 43288679 GCGGAGAGCTCCTTACCATTTGTGCAACCCCTAATAAACCACAGCAGTTCCTCCAGGACA 43288738 Query 147466 CCCCTCCAAAAGACCCTCTTGGTGGTCAGCA 147496 ||| ||| || || | ||| || ||||||| Sbjct 43288739 CCCTACCAGAACACACGCTTAGTTGTCAGCA 43288769 >seq3 Length=527952102 Score = 149 bits (164), Expect = 7e-31 Identities = 202/278 (73%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGT-TCCTGGCCAGCTGAATTTTCAGGGGCTCCA 146929 ||| |||||||||||||| |||| | | || ||| ||||||||||| |||| ||| | Sbjct 37328946 AATTTTGAGCTTGGGGAAAGGTCTTTGCTCTCATGG-AAGCTGAATTTTTAGGGACTCAA 37329004 Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 || || | || || || || || ||||| | | |||||||| || ||||| |||| Sbjct 37329005 TATGATTCACATATACATGAGCATCTCCCAGAGAAGGTACAAAGTCACCTGGCTTCAGGC 37329064 Query 146990 CGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 | || ||| | | ||||||||||||||| |||| ||||| ||| |||| || |||| Sbjct 37329065 CCGTGGTGTGAGTGATCATGTAGGTGAGCAGGAAGTAACTGGCAATGCTGAACGGCACCC 37329124 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGT 147109 | | |||||| || || || |||||| || || || || ||||| |||| | |||| Sbjct 37329125 CGATGCCCATATCTCCAGATTGCTGGTATAGTTGACAGGAAAGCTCTCCGTTCACTACGT 37329184 Query 147110 AAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 | ||| | || | || ||||| || |||| |||||| Sbjct 37329185 AGAACGGACAGA-GAGCTGGCATGGAGGCAAGGCCATG 37329221 Score = 138 bits (152), Expect = 1e-27 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| ||||| ||||| |||||||| Sbjct 265126894 CTTCAGGCCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGTTGAA 265126835 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || ||||| |||||||| || || || | |||||| ||||| || || ||||| || | Sbjct 265126834 CGGCACCCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAGGAAAGCTCACCATT 265126775 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 || ||||| ||||| || || ||||||||| |||| |||||| Sbjct 265126774 TGCTACGTAGAACTGACAGAGAGCGTGGCACGGAGGCAAGGCCATG 265126729 Score = 104 bits (114), Expect = 3e-17 Identities = 235/348 (68%), Gaps = 4/348 (1%) Strand=Plus/Plus Query 146802 GTGCGGGTGGTAGCCCTCGAGGGCAAAATCTTCTGCCCTGAAATCGTCTATGTCCTCCAC 146861 ||| |||| |||||| || | || || || ||| |||| || || || | | ||| Sbjct 405698337 GTGAGGGTTGTAGCCTTCCATCAGGAAGTCCTCAGCCTTGAAGTCATC-ATTTTTTACAC 405698395 Query 146862 CCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCA-GCTGAATTTTCA 146920 || | ||| |||| ||||||||| ||| || ||| || | |||||||| | | Sbjct 405698396 TTTCCAGAGAATTTTGAACTTGGGGAAAGGTTTTGG-TTCTTGCTGAAGCTGAATTGTTA 405698454 Query 146921 GGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCG 146980 ||||| | || || | || || || | || ||||| | ||| |||| || | Sbjct 405698455 TTGGCTCAATATGATTCACATATACATGAACATCTCCCAGAGAGTGTGCAAAATCACTTA 405698514 Query 146981 GCTTAAGGCCGGTCACGTGGGCCACCAT-GTAGGTGAGCAGCGAGTAGCTGGCTATGTTG 147039 ||| ||||| || | ||| | | || |||||||||||| ||||| |||| |||||| Sbjct 405698515 ACTTCAGGCCTGTGATGTGAGAGAATATTGTAGGTGAGCAGGGAGTAACTGGTGATGTTG 405698574 Query 147040 AAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG 147099 || | ||||| || ||||| || || || | |||||| ||||| || || ||||| | Sbjct 405698575 AACAGCACCCCAAGACCCATATCTCCAGATCACTGGTATAGCTGCCAGGAAAGCTCATCA 405698634 Query 147100 TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 | | || || ||||| || || ||| | || |||| |||||| Sbjct 405698635 TTCACTACATAGAACTGACAGAGAGCATGGTATGGTGGCAAAGCCATG 405698682 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| || |||||||||||||| |||||||| |||| || || | ||| || Sbjct 265123285 GCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAATCTCCTTCTTCTCTCTGA 265123226 Query 147343 GAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACT 147399 | || || || | ||| | ||| || | ||||| | ||| |||||||| ||| Sbjct 265123225 GTGAGGC---CCAGGTTGTCCAAAAATTCACGTGACCCATTGGCATCCCAGATCTTCACC 265123169 Query 147400 CCCTTGGCGGAGAGCTCCTTA 147420 |||||||| |||||||||||| Sbjct 265123168 CCCTTGGCAGAGAGCTCCTTA 265123148 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 147382 GCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATG 147441 || |||||||| ||| |||||||| |||||||||||| | ||| | |||| || Sbjct 37330256 GCATCCCAGATCTTCACCCCCTTGGCAGAGAGCTCCTTACCATTTGTGCAACCCCTTATA 37330315 Query 147442 AACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCA 147496 ||||||||||| |||||| || ||| |||| || || |||||| ||||||| Sbjct 37330316 AACCAGAGCAGTTCCTCCCCGACACCCTTCCAGAACACATGCTTGGTTGTCAGCA 37330370 >seq8 Length=312544902 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGG-CAATGCCCTGGTGATCCTAGTCCTCA 8668 |||||| |||||||| | | |||||| ||| ||||||| |||| | || |||| | Sbjct 271270594 GTACTCACTGGTGTTCAT-TGTGGGCTTGCTGGGCAATGCCGCGGTGGTGCTGATCCTTA 271270536 Query 8669 TAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTG 8728 |||||||||||| |||| | |||||||| |||| ||| |||||| ||||| | || Sbjct 271270535 CAAAGTACAAGAGACTCACAAGTATGACCAATATCTACCTTTTCAACTTGGCCATCTCTG 271270476 Query 8729 ACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 | ||||| | || | || | || || |||||||||| Sbjct 271270475 ATCTGCTTTTCCTTGTTACGATTCCATTCTGGATTCACT 271270437 >seq2 Length=541556283 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 || ||||| |||| |||||||||||||| ||||||| |||||||| ||||| | |||| Sbjct 113142847 AGAGTTACCTGGGCTGCCAGGCCTTGTCCCAGATGATCAAGTTTTACCTGGAGAAAGTGA 113142788 Query 178291 TGCCTCAGGCCGAGAAT 178307 |||||||||| |||||| Sbjct 113142787 TGCCTCAGGCAGAGAAT 113142771 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/156 (72%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 146940 GTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTG 146999 ||| || || || || ||||| ||| | ||||| || || ||||| ||||| || | ||| Sbjct 459841151 GTATACATGAGCATCTCCCAGAGTGGGTACAAAATCACCTGGCTTCAGGCCTGTGATGTG 459841092 Query 147000 GGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCAT 147059 | | | | |||||||||| | ||| |||| |||||||| | | || |||||||| Sbjct 459841091 AGTGATCTT--AGGTGAGCAGGGTGTAACTGGTGATGTTGAACAGCATTCCGAGGCCCAT 459841034 Query 147060 GTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTC 147095 || || || |||||| ||||| || || ||||| Sbjct 459841033 ATCTCCGGATTGCTGGTATAGCTGACAGGAAAGCTC 459840998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583451415302400