Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 170 3e-36 >seq2 Length=541556283 Score = 170 bits (188), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||||| |||||||| ||||| |||| |||| ||| |||| ||| Sbjct 494951892 TCTACAAAGTGCTGAAGCAGGTCCACCCTGACACCGG-----CATC-TCCTCCAAGGCCA 494951945 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | |||||| | Sbjct 494951946 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCC 494952005 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| || ||| | || ||||||||||| ||||||| Sbjct 494952006 GCCTGGCGCACTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 494952065 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 494952066 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 494952116 Score = 170 bits (188), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||||| |||||||| ||||| |||| |||| ||| |||| ||| Sbjct 494970952 TCTACAAAGTGCTGAAGCAGGTCCACCCTGACACCGG-----CATC-TCCTCCAAGGCCA 494970899 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| ||||||| | |||||| | Sbjct 494970898 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCC 494970839 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| || ||| | || ||||||||||| ||||||| Sbjct 494970838 GCCTGGCGCACTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 494970779 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 494970778 GCCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 494970728 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| || || |||| || |||| | ||| Sbjct 251267386 TACAAGGTGCTGAAGCAGGTCCACCCGGACAC-----GGGCATC-TCGTCCAAGGCTATG 251267439 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| || || ||||||||||| |||| ||||||| | |||||| ||| Sbjct 251267440 GGCATCATGAATTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCCGC 251267499 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 251267500 CTGGCGCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGC 251267559 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| ||| |||||| ||||||||| ||||| || |||| Sbjct 251267560 CTGCTGCTGCCCGGGGAATTGGCCAAGCACGCCGTTTCCGAAGGTACCA 251267608 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| || || |||| || |||| | ||| Sbjct 251292717 TACAAGGTGCTGAAGCAGGTCCACCCGGACAC-----GGGCATC-TCGTCCAAGGCTATG 251292664 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| || || ||||||||||| |||| ||||||| | |||||| ||| Sbjct 251292663 GGCATCATGAATTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCCGC 251292604 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 251292603 CTGGCGCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACGGCCGTGCGC 251292544 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| ||| |||||| ||||||||| ||||| || |||| Sbjct 251292543 CTGCTGCTGCCCGGGGAATTGGCCAAGCACGCCGTTTCCGAAGGTACCA 251292495 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| || || |||| || |||| ||||| Sbjct 258218111 TACAAGGTGCTGAAGCAGGTCCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 258218164 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||||| || Sbjct 258218165 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCCGT 258218224 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | ||||||||||| ||||||||| Sbjct 258218225 CTGGCGCACTACAACAAGCGCTCCACCATCACTTCCAGGGAGATCCAGACGGCCGTGCGC 258218284 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | | | ||| || ||||||| ||||||||| || |||||||||| Sbjct 258218285 CTGCTGCTCCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 258218333 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| || || |||| || |||| ||||| Sbjct 258242497 TACAAGGTGCTGAAGCAGGTCCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 258242444 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | |||||| || Sbjct 258242443 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCCGT 258242384 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | ||||||||||| ||||||||| Sbjct 258242383 CTGGCGCACTACAACAAGCGCTCCACCATCACTTCCAGGGAGATCCAGACGGCCGTGCGC 258242324 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | | | ||| || ||||||| ||||||||| || |||||||||| Sbjct 258242323 CTGCTGCTCCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCA 258242275 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||||| |||||||| ||||| |||| |||| ||| |||| ||| Sbjct 494992775 TCTACAAAGTGCTGAAGCAGGTCCACCCTGACACCGG-----CATC-TCCTCCAAGGCCA 494992722 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||| || || |||| ||||||| | |||||| | Sbjct 494992721 TGGGCATCATGAACTCCTTCGTCAATGATATCTTCGAGCGCATCGCCGGCGAGGCTTCCC 494992662 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| || ||| | || ||||||||||| ||||||| Sbjct 494992661 GCCTGGCGCACTACAACAAGCGCTCGACCATCACTTCCCGGGAGATCCAGACGGCCGTGC 494992602 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||| ||| || ||||||| ||||||||| || |||||||| Sbjct 494992601 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCAC 494992553 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||||| ||||| || ||||| |||| |||| ||| |||| | | Sbjct 494994684 TCTACAAAGTGCTGAAGCAAGTCCACCCTGATACCGG-----CATC-TCCTCCAAGGCAA 494994737 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || ||||||||||| |||| || |||| || |||||| || Sbjct 494994738 TGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGTATCGCCAGCGAGGCTTCTC 494994797 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || |||||||||| || ||| | || ||||||||||| || |||| Sbjct 494994798 GCCTGGCCCACTACAACAAGCGCTCGACCATCACATCCCGGGAGATCCAGACGGCTGTGC 494994857 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||||| | ||| ||| |||||||||| ||||||||| || |||||||| Sbjct 494994858 GCCTGCTGCTGCCCGGGGAACTGGCCAAGCACGCCGTGTCGGAGGGCAC 494994906 Score = 149 bits (164), Expect = 9e-30 Identities = 170/227 (75%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| || || ||| || |||| | ||| Sbjct 251246373 TACAAGGTGCTGAAGCAGGTCCACCCGGACAC-----GGGCATT-TCGTCCAAGGCTATG 251246426 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||| || || ||||||||||| |||| ||||||| | |||||| ||| Sbjct 251246427 GGCATCATGAATTCTTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCTTCCCGC 251246486 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | || ||||||||||| || |||||| Sbjct 251246487 CTGGCGCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACTGCTGTGCGC 251246546 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| || ||| |||||| ||||||||| ||||||||||| Sbjct 251246547 CTGCTGCTGCCTGGGGAATTGGCCAAGCACGCCGTGTCCGAGGGCAC 251246593 Score = 120 bits (132), Expect = 4e-21 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || ||||||||||| |||| ||||| | | |||||| Sbjct 251514056 CCATGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATAGCCGGCGAGGCGT 251514115 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 |||||||| | | |||||| ||| || ||| | | || ||||||||||| |||| Sbjct 251514116 CCCGCCTGGCACATTACAACAAACGCTCTACCATCACCTCCCGAGAGATCCAGACGGCCG 251514175 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||| | ||| || || || |||| ||| ||||| || |||||||||| Sbjct 251514176 TGCGCCTGCTGCTGCCGGGAGAGCTTGCCAAGCATGCCGTGTCTGAGGGCACCA 251514229 Score = 113 bits (124), Expect = 6e-19 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| | ||| ||||||||||| || ||||||||||| |||| || |||| || Sbjct 251443082 CAAGGCTATGGGCATCATGAACTCTTTCGTCAACGACATCTTCGAGCGTATCGCTGGTGA 251443023 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 ||| |||||||||| | |||||| ||| ||| ||| | |||||||||||||| Sbjct 251443022 GGCTTCCCGCCTGGCGCATTACAACAAACGCTCCACTATCACGTCCCGCGAGATCCAGAC 251442963 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| ||| | ||| ||| || |||| | ||||||||| || |||||||| Sbjct 251442962 TGCTGTGCGTCTGCTGTTGCCCGGAGAGTTGGCTAAGCACGCCGTGTCAGAGGGCAC 251442906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177327397580592