Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 408 6e-109 seq2 405 7e-108 seq1 134 2e-26 seq3 123 3e-23 seq4 104 3e-17 >seq6 Length=292091736 Score = 408 bits (452), Expect = 6e-109 Identities = 632/895 (71%), Gaps = 18/895 (2%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| ||||||||| | || ||||| || || | |||||||| || |||||||| || Sbjct 153786757 TGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCC 153786698 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAA 39429 |||||| || |||| |||| |||||||| |||| ||| || | | || |||| Sbjct 153786697 TTCCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAA 153786641 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 ||| ||| | || | ||| ||||| |||||||| || ||| ||||| | || Sbjct 153786640 AGCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCA 153786581 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTA- 39548 ||||||||| || | || || || | ||| || || | |||||| | ||| || |||| Sbjct 153786580 ATTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTAT-TCTAA 153786522 Query 39549 CGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAA 39608 | || | || || | | ||| || || || || | | ||||| | Sbjct 153786521 CAGCATTGACGATCATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGA 153786462 Query 39609 ACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAA 39668 ||||||||||||| || |||||||||| ||||||||||| ||||| ||||| || |||| Sbjct 153786461 ACATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAA 153786402 Query 39669 ATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAG 39728 | || | ||||||||||| ||| || || ||| |||| ||||||| |||||||| |||| Sbjct 153786401 AAGTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAG 153786342 Query 39729 AAAAGAAGATGCCTTCTACTGCTGCAAA---TGCAACAAGTCTCTCTCCGTAACTTGTAT 39785 |||||||||| ||||| ||||||||||| ||||||| || || || || ||| | Sbjct 153786341 AAAAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGT---TCACCATATGTTGCTT 153786285 Query 39786 CATTATGTATCCA---CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | | ||| ||| | || ||||| ||||||||||| || |||||||| | ||||| Sbjct 153786284 C--TTTGTCCCCAATCCATCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTT 153786227 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | || ||||| |||||| | | |||| | | || ||| |||||| || || | | Sbjct 153786226 CAATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTA--ATATGTGTCAATAAGAA 153786169 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG 39962 ||||||||||||| ||||| | ||| | || || || || || || || || || | | Sbjct 153786168 GACTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGG 153786109 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 |||| || | ||||| ||| | ||| | | | | |||||||||| ||||| |||| Sbjct 153786108 CTTCTGTTACCTGTACTTCTTGGCTAAACCGCTTCAACCAATTTTCATTTACTATGCCAT 153786049 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 |||| || ||||| || | || || || || || || || || || | |||| Sbjct 153786048 CACTTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAG 153785989 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | | ||||| | ||||| || || | ||| || || ||||||||||| || || |||| Sbjct 153785988 TTTCCCAGTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCT 153785929 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 |||| || || ||||||| || || ||| | || | || || || || ||||| Sbjct 153785928 CTGCTTTCTTATACATGTGTCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 153785874 >seq2 Length=541556283 Score = 405 bits (448), Expect = 7e-108 Identities = 639/907 (70%), Gaps = 9/907 (1%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| ||||||||| | || ||||| || || | |||||||| || |||||||| || Sbjct 435771119 TGACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCC 435771060 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAA 39429 |||||| || ||||| ||||| |||||||| ||||| ||| || | | || |||| Sbjct 435771059 TTCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAA 435771000 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 |||| ||| | || | ||| ||||| |||||||| |||||| ||||| | || Sbjct 435770999 ACCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCA 435770940 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 ||||||||| || | ||| | | | || || || | ||||| | ||| || |||| Sbjct 435770939 ATTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTAT-TCTAA 435770881 Query 39550 GGCCTCTGTT-ATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAA 39608 | ||| || || | | ||| || || || || | | ||||| | Sbjct 435770880 CAGCACTGACGATAATTTCTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGA 435770821 Query 39609 ACATTAAGCAGGCGAAG-TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 ||||||||||||| || |||||||||| |||||||||| ||||| | ||| || ||| Sbjct 435770820 ACATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAA 435770761 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || | ||||||||||| ||| || || |||||||| ||||||| |||||||| ||| Sbjct 435770760 AAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 435770701 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA 39787 ||||||||||| ||||| ||||||||||| || |||| || || || ||| || Sbjct 435770700 GAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTTCT 435770641 Query 39788 TTATGT---ATCCA-CTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC 39843 || | ||||| | | | ||||| ||||||||||| || |||||||| | |||||| Sbjct 435770640 TTGTCCCCAATCCATCATAAG-GCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTC 435770582 Query 39844 TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAG 39903 || ||||| |||||| | | |||| | | || |||| ||| || || || | || Sbjct 435770581 AATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAAG 435770522 Query 39904 ACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG- 39962 | |||||||||| ||||| ||| | || || | || || || || || || || | | Sbjct 435770521 ATTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGG 435770462 Query 39963 CTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCAT 40022 |||| || | | ||| ||| | ||| | ||| ||||||||||||| | ||| |||| Sbjct 435770461 CTTCTGTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCAT 435770402 Query 40023 CACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATT 40082 |||| || ||||| || || || ||||| || || || || || || | |||| Sbjct 435770401 CACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAG 435770342 Query 40083 TATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCT 40142 | ||||| | ||||| || || | ||| || || ||||||||||| || || |||| Sbjct 435770341 CTTCCCAGTGCTGCATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCT 435770282 Query 40143 CTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTAT 40202 || || || ||||||| ||| || ||| | || | || || || || ||||| | | Sbjct 435770281 ATGATTTCTTATACATGTGCCAAATGTCATGGTACTCAATGGGGAAGATGACAAAGCGCT 435770222 Query 40203 TTGGATT 40209 | ||||| Sbjct 435770221 TGGGATT 435770215 >seq1 Length=748055161 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||| || | ||||||||||| ||| || || | Sbjct 529237633 CCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 529237692 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||||| |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 529237693 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAG 529237752 Query 39759 CAAC 39762 | || Sbjct 529237753 CTAC 529237756 >seq3 Length=527952102 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| |||| ||| || | ||| || || || |||||||||||||| ||||| | ||||| Sbjct 368168861 CCTCGTCTCGACTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTTT 368168920 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| ||||| ||||||||||| || || ||||| || ||||| || || ||||| | Sbjct 368168921 TAAGCCAGAATATAGCAGCAAAAGAACCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAG 368168980 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | ||| ||||| Sbjct 368168981 CAACCACTCTTTCTCC 368168996 >seq4 Length=435153693 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| || || ||||| || | || || |||||||||| Sbjct 349039785 CACCACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTA 349039726 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 || ||||| || || || | || || | || || ||| |||| ||||| || || | Sbjct 349039725 AGATGGCATAATCTGGGTGCTTGGTGGTCAAGGTTGCAGCTGTTTCAGCAGCCAAGGTGT 349039666 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 70507 ||||||| | || || || || | |||| ||||| ||||||||||||| |||| Sbjct 349039665 CTAATTCCACTGTGGTCACCCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 349039609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | |||||||||||| || || | || || || | ||||| || || || || Sbjct 349054302 GAGCCTTCATATGTTTCATAGGGGCCATACTCTTTGGCCAACTCACAGCTGGCTTCCAAG 349054243 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| || |||| ||||| || || || || |||| || Sbjct 349054242 GCTCCATAATAAATAGTTTCAAAGATCTGTTTATTCAGTAACTGGGCCTCAGGACTCTCA 349054183 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || ||||| | || ||||||||||| |||| ||||| || ||||| || || || Sbjct 349054182 AAAGGATATCTCATCAGGATAAATGCATCAGCCAGACCCTGCACTCCAATTCCAATGGGG 349054123 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 349054122 CGATGGCGTTTATTTGA 349054106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686865730818240