Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6 383 1e-101 seq2 361 4e-95 seq4 132 4e-26 seq1 111 1e-19 seq3 89.7 4e-13 >seq6 Length=292091736 Score = 383 bits (424), Expect = 1e-101 Identities = 656/942 (70%), Gaps = 30/942 (3%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || || ||| | || |||||||| || || ||||| || |||||| |||| Sbjct 153785874 TTTGTCATCTTCCCCATTGAGTACCATGACATTTGACACATGTATAAGAAAGCAGAGGCC 153785933 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || || |||||||| || || || ||| | |||| || | ||||| ||| | | Sbjct 153785934 TCCTTCTGGACAGCTGAGGAGGTGGATCTTTCTAAGGATATTCAGCAC--TGGGAAACTT 153785991 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 | || | | || || | || |||||| || || | ||| ||||| || || || | Sbjct 153785992 TGAAGTCTGACGAGAAGTACTTCATATCTCACGTGTTAGGGTTCTTTGCAGCAAGTGATG 153786051 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937 | ||||| |||||||||| | | | |||||| |||||||| || || ||||||| | Sbjct 153786052 GCATAGTAAATGAAAATTGGTTGAAGCGGTTTAGCCAAGAAGTACAGGTAACAGAAGCCC 153786111 Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997 | || || ||||| || |||||||| || | ||||| ||||| |||||||| ||||||| Sbjct 153786112 GCTGCTTCTATGGCTTCCAAATTGCAATGGGAAATAGACATTCTGAAATGTATAGTCTTC 153786171 Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057 | || || || || | || || | || | | | | || ||||| || |||| Sbjct 153786172 TTATTGACACATA--TTAAGGACCCTAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAA 153786229 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT 44117 || ||||| ||||| | ||||| ||||||||| | | ||||| || || Sbjct 153786230 CACTACCTTGTGTTAAAAAGAAAGCTGACTGGGCCTTGA--TGGATTGGGGACAAAGAAG 153786287 Query 44118 CT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 | | ||| ||||| ||| || ||||||| || ||||| || |||||||| || | Sbjct 153786288 CAACATATGGTGAACGTGTTGCAGCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTT 153786347 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | ||||| ||||||| ||| |||||||||||||| |||||||| || || ||||||| Sbjct 153786348 CTTTTGCATCCATATTCTGGCCCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCAA 153786407 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGAT 44294 |||| || || || | ||||| || |||||||| |||||||| ||||| | | | Sbjct 153786408 ATGAATTTATTAGCAGAGATGAGGGTTTACATTGTGATTTTGCCTGCTTAATGTTCAAAC 153786467 Query 44295 ATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAA 44354 | || | | || ||||||||| | | | | | ||| || | || | || || | Sbjct 153786468 ACCTGGTACAC---AAGCCTTCAGAGGAAAAAGTGAAAGAAATGATCGTCAATGCTGTTA 153786524 Query 44355 AGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAA 44413 |||||||| || ||| |||| ||| || |||||||| || || |||||||| || | Sbjct 153786525 GAATAGAACAGGAGTTTTTGACTGAAGCTTTGCCTGTAAAGTTGATTGGAATGAATTGCA 153786584 Query 44414 CTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGC 44473 | ||| ||||| |||||||| |||| | ||||| | | | |||||||| | || Sbjct 153786585 C-TTTAATGAAGCAATATATCGAATTTGTAGCAGACAGACTTATGTTGGAACTAGCTT-- 153786641 Query 44474 GATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGA 44529 | | || || || | | |||| | ||||||||||||| |||| || ||||| Sbjct 153786642 --TTAGCAAGATTTTTAGAGCAGAAAATCTATTTGATTTTATGG---ATATCTCTTTGGA 153786696 Query 44530 AGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGAT 44589 ||| ||||| ||||| || || || | || |||||||||||| ||||||| || ||| Sbjct 153786697 AGGGAAAACTAACTTCTTCGAGAAGAGAGTAGGAGAATATCAGAGAATGGGAGTGATGTC 153786756 Query 44590 AA---CAAGTGACAATAAATTTACTACGGATGAAGATTTCTA 44628 || ||| ||| ||| ||||| ||||| ||| ||||| Sbjct 153786757 AAGTCCAACTGAAAATTCTTTTACCTTGGATGCAGACTTCTA 153786798 >seq2 Length=541556283 Score = 361 bits (400), Expect = 4e-95 Identities = 662/959 (69%), Gaps = 23/959 (2%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || || ||| | || |||||||| ||||| ||||| || ||| || |||| Sbjct 435770227 TTTGTCATCTTCCCCATTGAGTACCATGACATTTGGCACATGTATAAGAAATCATAGGCC 435770286 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGGATTGCATT 43818 || || |||||||| || || || ||| | |||| || | ||| || ||| || || Sbjct 435770287 TCCTTCTGGACAGCTGAGGAGGTGGATCTTTCTAAGGATAT-GCAGCACTGGGAAGCTTT 435770345 Query 43819 AAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 || | | || || | || |||||| || || || || ||||| || || || || Sbjct 435770346 GAAGTCTGAGGAGAAGTACTTCATATCTCATGTGTTAGCTTTCTTTGCAGCAAGTGATGG 435770405 Query 43879 GATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC- 43937 ||| | |||||||||||||| |||||| |||||||| | || ||||||| | Sbjct 435770406 CATAATAAATGAAAATTTGGTGGAGCGGTTTAGCCAAGAAGTATAGGTAACAGAAGCCCC 435770465 Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997 | || || ||||| || ||||||| || || | || ||||| |||||||| | ||||| Sbjct 435770466 GCTGCTTCTATGGCTTCCAAATTGGAATGGAGAGCATACATTCTGAAATGTATAATCTTC 435770525 Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAA 44057 | || || || || || || || | || | | | | || ||||| || |||| Sbjct 435770526 TTATTGACACTTATATTAAGGACCCTAAAGAAAGGGAATTTCTCTTCAATGCCATTGAAA 435770585 Query 44058 CAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT 44117 || ||||| ||||| | ||||| ||||||||| | |||||| || || Sbjct 435770586 CACTACCTTGTGTTAAAAAGAAAGCTGACTGGGCCTTATGATGGATTGGGGACAAAGAAG 435770645 Query 44118 CT---TTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGAT 44174 | | ||| |||| |||| || ||||||| || ||||| || |||||||| || | Sbjct 435770646 CAACATATGGTGAACATGTTGTAGCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTT 435770705 Query 44175 CGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAA 44234 | ||||| ||||||| ||| | |||||||||||||| |||||||| || || ||||||| Sbjct 435770706 CTTTTGCATCCATATTCTGGCTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCAA 435770765 Query 44235 ATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA-TTTTGCTTGCTTGTTACTTGGA 44293 |||| | || || | ||||| | |||||||| || |||||| ||||| | | | Sbjct 435770766 ATGAACTTATTAGCAGAGATGAGGATTTACATTGTGATTTTTGCCTGCTTAATGTTCAAA 435770825 Query 44294 TATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTA 44353 | || | || ||||||||| | | | | | ||| ||| | || || || Sbjct 435770826 CACCTGGTTCAC---AAGCCTTCAGAGGAAAAAGTGAAAGAAATTATCGTCAGTGCTGTT 435770882 Query 44354 AAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGA 44412 | |||||||| || || |||| | | || | | |||| || || |||||||| || Sbjct 435770883 AGAATAGAACAGGAGTTCTTGACTGAACCTTTGCATATAAAATTGATTGGAATGAATTGC 435770942 Query 44413 ACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTG 44472 || ||| ||||| ||||| ||||||| | ||||| | | | |||||||| |||| Sbjct 435770943 AC-TTTAATGAAGCAATACATTGAATTTGTAGCAGACAGACTTATGTTGGAACTAGGTT- 435771000 Query 44473 CGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGG 44528 | | || || || | | |||| || |||||||||||||| ||||| || |||| Sbjct 435771001 ---TTAGCAAGATTTTTAGAGCAGAAAATCCATTTGATTTTATGGAGAATATCTCTTTGG 435771057 Query 44529 AAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGA 44588 |||| ||||| ||||| || || || | || |||||||||||| ||||||| || ||| Sbjct 435771058 AAGGGAAAACTAACTTCTTCGAGAACAGAGTAGGAGAATATCAGAGAATGGGAGTGATGT 435771117 Query 44589 TAA---CAAGTGACAATAAATTTACTACGGATGAAGATTTCTAATTAATCAGAAAACTT 44644 || ||| ||| ||| ||||| ||||| ||| ||||| | | | ||| |||| Sbjct 435771118 CAAGTCCAACTGAGAATTCTTTTACCTTGGATGGAGACTTCTAGATGAACTGAAGACTT 435771176 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/168 (72%), Gaps = 7/168 (4%) Strand=Plus/Minus Query 19535 GGCGCAAA-AGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAA 19593 || ||||| ||| |||||| || || || | |||||| | || || ||||| ||||| Sbjct 206643143 GGAGCAAACAGTGGTTTGCATATCATCATCTTTGATGAAATTGATGCTATCTGCAAGCAG 206643084 Query 19594 AGAGGTT------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCA 19647 ||||| |||| | ||||| ||||||||||||||||| ||| | ||||| Sbjct 206643083 AGAGGGAGTATGGCTGGCAGCACGGGAGTTCATGACACTGTTGTCAACCAATTGTTGTCA 206643024 Query 19648 AAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 ||| | || ||||| | ||||| || || || ||||| ||||| ||| Sbjct 206643023 AAAATTGATGGTGTGGAACAACTAAACAACATCTTAGTCATTGGTATG 206642976 >seq4 Length=435153693 Score = 132 bits (146), Expect = 4e-26 Identities = 237/345 (69%), Gaps = 11/345 (3%) Strand=Plus/Minus Query 77342 TCCAGCTTCATAAAGTCATCCTTGTTGACAACTGACCCTCCGCCATGCAGCC----TCCA 77397 || ||||||| |||||| || |||||| |||||| | | |||| |||| Sbjct 243903179 TCGAGCTTCACAAAGTCGTCTTTGTTG----CTGACCTTTTTGCCTGCACTTGTTTTCCA 243903124 Query 77398 GCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTC 77457 ||| || | |||||||| |||| || || || | |||||| | || |||| || | Sbjct 243903123 GCCATTTTTCTTCCAGTCTTTAATCCTATTCGTTATACCATTTACAGTACACATACTATA 243903064 Query 77458 TGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGC 77517 |||||||| |||||||| ||||| || | |||| || |||| || |||||| | || Sbjct 243903063 TGTGTAGAGAACCAGCTTATTGATATTTTGATCCTTTGCCTGTTCCAAGGCTTTGCAGGC 243903004 Query 77518 AGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAG 77577 || || ||||| || | |||||||| ||| |||| ||||| || | ||||| || Sbjct 243903003 GGCATGAATTTCTGCTCTTTGGTTTGTTTGTCGCCCAGTAAGTCTATCACCCACATTTAG 243902944 Query 77578 CGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGA 77637 || || ||||| || || |||||||||||||| | |||||| || || Sbjct 243902943 GGGATGGCCTGGCCCCCAGTAAACACCAATGCCAGCTCGAG---GTTTCTTCCCCTTACT 243902887 Query 77638 TAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682 |||| ||||| || ||||| || || | || || ||||| || Sbjct 243902886 GGAGCAGCAGCCATCTGTGTAAACGACAGCCGCATCTCCCATATA 243902842 >seq1 Length=748055161 Score = 111 bits (122), Expect = 1e-19 Identities = 123/161 (76%), Gaps = 5/161 (3%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| || |||||||||||||| ||||| || |||||||| ||||| ||||| || Sbjct 529233656 GTAGAAAATCCATTTGATTTTATGGAGAATATCTCTTTGGAAGGAAAAACTAACTTCTTC 529233597 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAA 44605 || || | || |||||||||||| ||||||| || ||| || ||| ||| ||| Sbjct 529233596 GAGAAGAGAGTAGGAGAATATCAGAGAATGGGAGTGATGTCAAGTCCAACTGAGAATTCT 529233537 Query 44606 TTTACTACGGATGAAGATTTCTA-ATTAATCAGAAAACTTG 44645 ||||| ||||| ||| ||||| || ||| ||| ||||| Sbjct 529233536 TTTACCTTGGATGCAGACTTCTAGATGAAT-TGAAGACTTG 529233497 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||||| || ||||| || |||||||| || || ||||| Sbjct 529237768 GGTGAACGTGTCGTAGCTTTTGCAGCAGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 529237709 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||||| ||| | |||||||||||||| |||||||| || || ||||||||||| | Sbjct 529237708 TCCATATTCTGGCTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCAAATGAACTT 529237649 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 529237648 ATTAGCAGAGATGA 529237635 >seq3 Length=527952102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/143 (74%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || |||||||| |||||||||||||| ||||||| |||||||| |||||||||||| Sbjct 368162332 AATCCCTTTGATTTCATGGAAAATATTTCTCTGGAAGGGAAAACAAATTTTTTTGAAAAA 368162273 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTACT 44611 | || |||||||| || | | || ||| ||||| |||||| || || Sbjct 368162272 AGGGTCTCCGAATATCAACGCTTTGCAGTTATGGCTGAAACAACAGACAATGTCTTCACC 368162213 Query 44612 ACGGATGAAGATTTCTAATTAAT 44634 ||||| |||||| ||||| || Sbjct 368162212 TTGGATGCAGATTTTTAATTCAT 368162190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397431702521080