Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2 91.5 1e-13 seq3 89.7 4e-13 seq6 87.8 2e-12 >seq2 Length=541556283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| || || |||||||| || | |||| | Sbjct 520270702 CGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 520270643 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | |||||||| Sbjct 520270642 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 520270583 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | |||||| ||| || || || || || || Sbjct 520270582 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 520270523 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 520270522 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520270488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| || || |||||||| || | |||| | Sbjct 520270930 CGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 520270871 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | |||||||| Sbjct 520270870 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 520270811 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | |||||| ||| || || || || || || Sbjct 520270810 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 520270751 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 520270750 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520270716 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| || || |||||||| || | |||| | Sbjct 520271158 CGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 520271099 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | |||||||| Sbjct 520271098 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 520271039 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | |||||| ||| || || || || || || Sbjct 520271038 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 520270979 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 520270978 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520270944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| || || |||||||| || | |||| | Sbjct 520271386 CGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 520271327 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | |||||||| Sbjct 520271326 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 520271267 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | |||||| ||| || || || || || || Sbjct 520271266 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 520271207 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 520271206 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271172 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| || || |||||||| || | |||| | Sbjct 520271614 CGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 520271555 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | |||||||| Sbjct 520271554 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 520271495 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | |||||| ||| || || || || || || Sbjct 520271494 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCTACCTCCAGGGTGATG 520271435 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 520271434 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271400 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| || || |||||||| || | |||| | Sbjct 520271842 CGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 520271783 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | |||||||| Sbjct 520271782 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 520271723 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | |||||| ||| || || || || || || Sbjct 520271722 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 520271663 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 520271662 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271628 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| || || |||||||| || | |||| | Sbjct 520272070 CGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 520272011 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | |||||||| Sbjct 520272010 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 520271951 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | |||||| ||| || || || || || || Sbjct 520271950 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 520271891 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 520271890 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520271856 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| || || |||||||| || | |||| | Sbjct 520272298 CGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 520272239 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | |||||||| Sbjct 520272238 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 520272179 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | |||||| ||| || || || || || || Sbjct 520272178 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 520272119 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 520272118 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520272084 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| || || |||||||| || | |||| | Sbjct 520272526 CGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 520272467 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | |||||||| Sbjct 520272466 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 520272407 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | |||||| ||| || || || || || || Sbjct 520272406 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 520272347 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 520272346 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520272312 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| | || || ||||| || || |||||||| || | |||| | Sbjct 520272754 CGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 520272695 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | ||||| | ||| || || || || | |||||||| Sbjct 520272694 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 520272635 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| || | | || | |||||| ||| || || || || || || Sbjct 520272634 TCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATG 520272575 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 520272574 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 520272540 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/236 (68%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||| |||| || || || || ||||| || || |||||||| Sbjct 253275912 TGCCCCCTCGAAGACGCAGCACCAGGTGGAAAGTGGACTCTTTCTGGATGTTGTAGTCAG 253275971 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || ||||| |||||||| || || |||| | | | |||||||| | | Sbjct 253275972 AGAGAGTCTGGTCATCTTCTAGCTGTTTTCCAGCAAAAATCAAATGTTGTTGATCTAGTG 253276031 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||| || || || ||| ||| ||| | | ||| | ||| || ||| || Sbjct 253276032 GGATACCTTCCTTGTCCTGGATTTTGACTTTGATGTTTTTGATAGTATCAACTGGGCTCT 253276091 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || ||||| |||| ||||| ||||| || ||||||||||| ||||| |||| Sbjct 253276092 ATATCAAGAGTGATAGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 253276147 >seq3 Length=527952102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || || || || ||||| || || |||||||| || | | || | ||||| Sbjct 475400807 ACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCT 475400748 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| |||||||| | || || | ||| || || || || | || ||||| || | Sbjct 475400747 AGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 475400688 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| ||| ||| ||||| || || || | ||| Sbjct 475400687 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACTTCAAGGGTGATGGTTTTA 475400628 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || ||||||||||| ||||| Sbjct 475400627 CCAGTCAAGGTCTTCACAAAGATCTGCAT 475400599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || || || || ||||| || || |||||||| || | | || | ||||| Sbjct 475400351 ACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 475400292 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| |||||||| | || || | ||| || || || || | || ||||| || | Sbjct 475400291 AGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCCTGG 475400232 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | || || ||| || ||||| || || || | ||| Sbjct 475400231 ATCTTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCACTTCAAGGGTAATGGTCTTG 475400172 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || ||||||||||| ||||| Sbjct 475400171 CCAGTCAGGGTCTTCACAAAGATCTGCAT 475400143 >seq6 Length=292091736 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| |||| ||||| || | || || ||||||||||| |||||||| | Sbjct 193103657 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTTTGAATGTTGTAGTCAGAC 193103598 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| ||||| || ||||| | || || | ||| || || || || Sbjct 193103597 AGGGTACGACCATCTTCTAGCTGCTTCCCGGCAAAGATCAGTCTCTGCTGGTCTGGAGGG 193103538 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || |||||| || | | || | ||||| ||| ||| ||| Sbjct 193103537 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTACT 193103478 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || || || || | ||||| ||||| || |||||| Sbjct 193103477 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 193103442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424908422697792