Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25]
5,016 sequences; 3,598,443,077 total letters
Query= NC_027984.1
Length=57677
Score E
Sequences producing significant alignments: (Bits) Value
seq2 291 3e-74
seq6 237 6e-58
seq4 170 7e-38
seq3957 159 1e-34
seq1 159 1e-34
seq8 140 1e-28
seq4440 118 4e-22
>seq2
Length=541556283
Score = 291 bits (322), Expect = 3e-74
Identities = 214/249 (86%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 22359 CATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATC 22418
||||||| |||||| |||||||| |||||||||||| | ||||| || | | |||||||
Sbjct 379914076 CATATTCACAATAACCCCTTTAGAGAAATAGGCCAGCTCTTCACTCTAGCGCACCACATC 379914135
Query 22419 TTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGA 22478
||| ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||
Sbjct 379914136 TTGTGAATATATGTGTAGAAACTTCCGGAATTCGTCGTGGTATTCTCTCCAGAGCGATGA 379914195
Query 22479 AAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCAC 22538
|||||| |||||| |||||||||||||| ||||| |||||||||| | | || ||||
Sbjct 379914196 AAACGTGTCAGTTGTCTCATGGAAAACGGCGTAACGAGGGTGAACAGTCTTCCGTATCGT 379914255
Query 22539 CAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGGCAAG 22598
|||||||||||||||||||| |||||| || |||| |||||||||| |||| ||| | |
Sbjct 379914256 CAGCTCACCGTCTTTCATTGACATACGTAAGTCCGAATGAGCATTCGTCAGCCGGACGTG 379914315
Query 22599 AATGTGAAT 22607
|||||| ||
Sbjct 379914316 AATGTGGAT 379914324
Score = 89.7 bits (98), Expect = 2e-13
Identities = 132/182 (73%), Gaps = 4/182 (2%)
Strand=Plus/Minus
Query 22212 AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT-TGCCCATGG 22270
||||||||||||| || ||||| ||| || |||| || | ||| | | |||
Sbjct 442800742 AACCTGAATCGCCCTCGATATCAGTCTCTTTCCGTATTGCA-ATGAGATTATATCTATG- 442800685
Query 22271 TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC 22330
|| | ||| | ||||| | ||| ||| || || | ||||||||||||||| |||||||
Sbjct 442800684 TGTATACGTGCGCGAACACGTTTTCCCTAGTGAGCGCGTTTAAATCAAAACAGGTGAAAA 442800625
Query 22331 TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATA-AACCCTTTAGGGAAATAG 22389
||||||| | | ||| | | |||||| | ||||||| ||| | |||| ||| || | ||
Sbjct 442800624 TCACCCACGAAATGGATCACACGAAAGATCTATTCTCGATATACCCCTATAGCGATAAAG 442800565
Query 22390 GC 22391
||
Sbjct 442800564 GC 442800563
>seq6
Length=292091736
Score = 237 bits (262), Expect = 6e-58
Identities = 222/277 (80%), Gaps = 4/277 (1%)
Strand=Plus/Plus
Query 22232 TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT 22291
||||||||||||||||||||| ||||| ||||||| | ||| | || ||||||| ||
Sbjct 122332215 TCAGCACCTTGTCGCCTTGCGGATAATCTTTGCCCCTCGTGCACCCGTGGGCGAATGTGT 122332274
Query 22292 TGTCCATATT-GGCCACGTTTAAATCAAAACTGGTGAA-ACTCACCCAGGGATTGGCTGA 22349
|||||||||| || ||||||| |||| ||| |||||| ||| ||||| |||| ||||
Sbjct 122332275 TGTCCATATTTGGTCACGTTTGAATCTCAACAGGTGAATACTACTCCAGGAATTGTCTGA 122332334
Query 22350 GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACA 22409
|||||||||||| |||| ||||| ||| ||||||| || |||||||||||| |||||||
Sbjct 122332335 GACGAAAAACATCATCTCGATAAATCCTATAGGGAATTATGCCAGGTTTTCATCGTAACA 122332394
Query 22410 CGCCAC-ATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCC 22468
|| ||| ||| |||| | | |||||||||||||||| |||||||| |||| | || ||
Sbjct 122332395 CGACACAATCAGGCGATTTTGCGTGTAGAAACTGCCGGGAATCGTCGGGGTACTAACGCC 122332454
Query 22469 AGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAAC 22505
||| | || | | || |||| ||||| |||||||
Sbjct 122332455 TGAGGGTTGCAGA-GTAAAAGTTGGCTCAAGGAAAAC 122332490
>seq4
Length=435153693
Score = 170 bits (188), Expect = 7e-38
Identities = 148/184 (80%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 22633 TTTTTCTTTACGGTCTTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTA 22692
|||||||||||||||| | |||||| |||||||||||||| || || || || || ||
Sbjct 201556939 TTTTTCTTTACGGTCTATCCAAAGGCTGTAATATCCAGCTGGTCGTTCAGGATAGAGTTA 201556998
Query 22693 CATTGAGCAACTGACTGAAATGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCA 22752
|| || |||| ||||| |||| ||||||||||||||||| |||||| |||| ||| ||
Sbjct 201556999 CAGTGTGCAAGTGACTTAAATACCTCAAAATGTTCTTTAGGATGCCCCTGGGTTATCTCG 201557058
Query 22753 ACGGTGGTATATCCAGTGAtttttttCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTC 22812
| ||||| ||||||||||| ||||||| |||| ||| | | || ||||| |||| ||
Sbjct 201557059 ATGGTGGAATATCCAGTGAATTTTTTCGTCATTATAGATGCATTGGCTCCAGAAACTCAG 201557118
Query 22813 GATA 22816
||||
Sbjct 201557119 GATA 201557122
>seq3957
Length=306607
Score = 159 bits (176), Expect = 1e-34
Identities = 238/314 (76%), Gaps = 18/314 (6%)
Strand=Plus/Plus
Query 22360 ATATTCTCAATAAACCCTTTAGGGAAATAGGCC-AGGTTTT-CACCGTAACACGCCACAT 22417
|| ||| | ||| || ||||||||||||||| |||| || || |||||||||| ||
Sbjct 297485 ATGTTCCCGATATACTCTTTAGGGAAATAGGGGGAGGTCTTACAAAGTAACACGCCCCAA 297544
Query 22418 CTT-GCGAATATATGT-GTAGAAAC-TGCCGGA-AATCGTCGTGGTATTCACTCCAGAG- 22472
|| | |||||||| | ||||| || |||| || ||||| |||||| ||| |||| ||
Sbjct 297545 GTTAGGGAATATATCTTGTAGAGACCTGCCCGACAATCGCCGTGGTCTTCTCTCCCGAAT 297604
Query 22473 CGATGAAAACGTT-TCA-GTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACAC-TATC 22529
|||||| |||| | ||| ||||||||||| | ||| | ||| ||||| ||| || ||||
Sbjct 297605 CGATGACAACGGTCTCACGTTTGCTCATGAATAACAGGGTATTAAGGGAGAAAACATATC 297664
Query 22530 CCA-TATCACCAGCTCACCGTCTTTCATTGCCATACGG-AATTCCGGATG-AGCATTCAT 22586
| | || | ||||||||||||||| |||||| | || || |||| ||| | |||| |
Sbjct 297665 TCTGTGTCTCTAGCTCACCGTCTTTCGTTGCCAAAAGGAAAATCCGAATGAAAGATTCCT 297724
Query 22587 -CAGGC-GGGCAAGAATGTGAATAAAG-GCCGGATAAAACTTG-TGCTTATTTTTC-TTT 22641
|||| ||| | || |||| || ||| || ||||| || ||| |||||| ||||| |||
Sbjct 297725 GAAGGCGGGGGAGGAGTGTGGATTAAGAGCGGGATAGAATTTGTTGCTTAATTTTCTTTT 297784
Query 22642 ACGGTCTTTAAAAA 22655
| ||||||||||
Sbjct 297785 TCACTCTTTAAAAA 297798
>seq1
Length=748055161
Score = 159 bits (176), Expect = 1e-34
Identities = 115/133 (86%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 22201 ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT 22260
||||| |||| |||||| ||| | |||| |||| ||||||| |||||||||||| ||||
Sbjct 306544674 ACGGCCTGATCAACCTGGATCTCACGCGGAATCAACACCTTGCCGCCTTGCGTATCATAT 306544733
Query 22261 TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA 22320
|||||||||| | |||||| |||||||||||||| |||||||| ||| | ||||||| ||
Sbjct 306544734 TTGCCCATGGAGCAAACGGCGGCGAAGAAGTTGTGCATATTGGTCACCTATAAATCAGAA 306544793
Query 22321 CTGGTGAAACTCA 22333
|||||||||||||
Sbjct 306544794 CTGGTGAAACTCA 306544806
Score = 141 bits (156), Expect = 3e-29
Identities = 101/116 (87%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 22164 TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC 22223
||||||| |||||||||||| ||| ||||||||| || ||||||||||||||||||||
Sbjct 247745859 TTCATTACCCATTCTGCCGACCTGGCTGCCATCACACACCGCATGATGAACCTGAATCGC 247745800
Query 22224 CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG 22279
||| |||||||||| ||| ||| ||||||||||||||||| | ||| ||||||||
Sbjct 247745799 CAGTCGCATCAGCACGTTGGCGCGTTGCGTATAATATTTGCTCTTGGGGAAAACGG 247745744
Score = 125 bits (138), Expect = 3e-24
Identities = 111/136 (82%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 22442 GCCGGAAATCGTCGTGGTATTCACTCCAGA-GCGATGAAAACGTTT-CAGTTTGCTCATG 22499
|||||||||||| | || ||||| ||||| | ||||||||||||| |||||||||||
Sbjct 509120136 GCCGGAAATCGTTGCGGAATTCATCCCAGAAGGGATGAAAACGTTTTCAGTTTGCTCAGT 509120077
Query 22500 GAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGC 22559
|||| || |||| | ||||||||||||||||||| ||||||| | | |||||||||
Sbjct 509120076 GAAACCGATGTATCTAGGGTGAACACTATCCCATGTCACCAGTAAGCAGGCTTTCATTGA 509120017
Query 22560 CATACGGAATTCCGGA 22575
|||| |||| |||||
Sbjct 509120016 CATAACGAATGCCGGA 509120001
>seq8
Length=312544902
Score = 140 bits (154), Expect = 1e-28
Identities = 107/124 (86%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 22323 GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGG 22382
|| ||||| || ||||||||||||||||| | ||||||||||||||| | |||||||||
Sbjct 9856187 GGGGAAACGAACTCAGGGATTGGCTGAGACCAGAAACATATTCTCAATGACCCCTTTAGG 9856246
Query 22383 GAAATAGGCCAGGTTTTCACCGTAACACGCCACATC-TTGCGAATATATGTGTAGAAA-C 22440
|||| | |||||| ||||| ||| ||||||||||| | ||||||||||||||||||| |
Sbjct 9856247 GAAAGACGCCAGGCTTTCATCGTCTCACGCCACATCGTGGCGAATATATGTGTAGAAACC 9856306
Query 22441 TGCC 22444
||||
Sbjct 9856307 TGCC 9856310
>seq4440
Length=15902
Score = 118 bits (130), Expect = 4e-22
Identities = 92/107 (86%), Gaps = 2/107 (2%)
Strand=Plus/Minus
Query 22319 AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTT 22378
||||||||| ||||||||||||||||||||| ||||| || ||||| ||| || |||
Sbjct 5833 AACTGGTGACACTCACCCAGGGATTGGCTGACACGAACAAACTATTCCTCATACACACTT 5774
Query 22379 TAGGGAAATAGGCCAGGTTTTCAC-CGTAACACGCCACATCTTGCGA 22424
||||| ||||| ||||||||||| |||| |||||||||||||||||
Sbjct 5773 TAGGGCCATAGGTCAGGTTTTCACGCGTA-CACGCCACATCTTGCGA 5728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 184433813545488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |