Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq2 291 3e-74 seq6 237 6e-58 seq4 170 7e-38 seq3957 159 1e-34 seq1 159 1e-34 seq8 140 1e-28 seq4440 118 4e-22 >seq2 Length=541556283 Score = 291 bits (322), Expect = 3e-74 Identities = 214/249 (86%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 22359 CATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATC 22418 ||||||| |||||| |||||||| |||||||||||| | ||||| || | | ||||||| Sbjct 379914076 CATATTCACAATAACCCCTTTAGAGAAATAGGCCAGCTCTTCACTCTAGCGCACCACATC 379914135 Query 22419 TTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGA 22478 ||| ||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| Sbjct 379914136 TTGTGAATATATGTGTAGAAACTTCCGGAATTCGTCGTGGTATTCTCTCCAGAGCGATGA 379914195 Query 22479 AAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATATCAC 22538 |||||| |||||| |||||||||||||| ||||| |||||||||| | | || |||| Sbjct 379914196 AAACGTGTCAGTTGTCTCATGGAAAACGGCGTAACGAGGGTGAACAGTCTTCCGTATCGT 379914255 Query 22539 CAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGGCAAG 22598 |||||||||||||||||||| |||||| || |||| |||||||||| |||| ||| | | Sbjct 379914256 CAGCTCACCGTCTTTCATTGACATACGTAAGTCCGAATGAGCATTCGTCAGCCGGACGTG 379914315 Query 22599 AATGTGAAT 22607 |||||| || Sbjct 379914316 AATGTGGAT 379914324 Score = 89.7 bits (98), Expect = 2e-13 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 22212 AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT-TGCCCATGG 22270 ||||||||||||| || ||||| ||| || |||| || | ||| | | ||| Sbjct 442800742 AACCTGAATCGCCCTCGATATCAGTCTCTTTCCGTATTGCA-ATGAGATTATATCTATG- 442800685 Query 22271 TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAAC 22330 || | ||| | ||||| | ||| ||| || || | ||||||||||||||| ||||||| Sbjct 442800684 TGTATACGTGCGCGAACACGTTTTCCCTAGTGAGCGCGTTTAAATCAAAACAGGTGAAAA 442800625 Query 22331 TCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATA-AACCCTTTAGGGAAATAG 22389 ||||||| | | ||| | | |||||| | ||||||| ||| | |||| ||| || | || Sbjct 442800624 TCACCCACGAAATGGATCACACGAAAGATCTATTCTCGATATACCCCTATAGCGATAAAG 442800565 Query 22390 GC 22391 || Sbjct 442800564 GC 442800563 >seq6 Length=292091736 Score = 237 bits (262), Expect = 6e-58 Identities = 222/277 (80%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 22232 TCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGT 22291 ||||||||||||||||||||| ||||| ||||||| | ||| | || ||||||| || Sbjct 122332215 TCAGCACCTTGTCGCCTTGCGGATAATCTTTGCCCCTCGTGCACCCGTGGGCGAATGTGT 122332274 Query 22292 TGTCCATATT-GGCCACGTTTAAATCAAAACTGGTGAA-ACTCACCCAGGGATTGGCTGA 22349 |||||||||| || ||||||| |||| ||| |||||| ||| ||||| |||| |||| Sbjct 122332275 TGTCCATATTTGGTCACGTTTGAATCTCAACAGGTGAATACTACTCCAGGAATTGTCTGA 122332334 Query 22350 GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACA 22409 |||||||||||| |||| ||||| ||| ||||||| || |||||||||||| ||||||| Sbjct 122332335 GACGAAAAACATCATCTCGATAAATCCTATAGGGAATTATGCCAGGTTTTCATCGTAACA 122332394 Query 22410 CGCCAC-ATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTCC 22468 || ||| ||| |||| | | |||||||||||||||| |||||||| |||| | || || Sbjct 122332395 CGACACAATCAGGCGATTTTGCGTGTAGAAACTGCCGGGAATCGTCGGGGTACTAACGCC 122332454 Query 22469 AGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAAC 22505 ||| | || | | || |||| ||||| ||||||| Sbjct 122332455 TGAGGGTTGCAGA-GTAAAAGTTGGCTCAAGGAAAAC 122332490 >seq4 Length=435153693 Score = 170 bits (188), Expect = 7e-38 Identities = 148/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 22633 TTTTTCTTTACGGTCTTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTA 22692 |||||||||||||||| | |||||| |||||||||||||| || || || || || || Sbjct 201556939 TTTTTCTTTACGGTCTATCCAAAGGCTGTAATATCCAGCTGGTCGTTCAGGATAGAGTTA 201556998 Query 22693 CATTGAGCAACTGACTGAAATGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCA 22752 || || |||| ||||| |||| ||||||||||||||||| |||||| |||| ||| || Sbjct 201556999 CAGTGTGCAAGTGACTTAAATACCTCAAAATGTTCTTTAGGATGCCCCTGGGTTATCTCG 201557058 Query 22753 ACGGTGGTATATCCAGTGAtttttttCTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTC 22812 | ||||| ||||||||||| ||||||| |||| ||| | | || ||||| |||| || Sbjct 201557059 ATGGTGGAATATCCAGTGAATTTTTTCGTCATTATAGATGCATTGGCTCCAGAAACTCAG 201557118 Query 22813 GATA 22816 |||| Sbjct 201557119 GATA 201557122 >seq3957 Length=306607 Score = 159 bits (176), Expect = 1e-34 Identities = 238/314 (76%), Gaps = 18/314 (6%) Strand=Plus/Plus Query 22360 ATATTCTCAATAAACCCTTTAGGGAAATAGGCC-AGGTTTT-CACCGTAACACGCCACAT 22417 || ||| | ||| || ||||||||||||||| |||| || || |||||||||| || Sbjct 297485 ATGTTCCCGATATACTCTTTAGGGAAATAGGGGGAGGTCTTACAAAGTAACACGCCCCAA 297544 Query 22418 CTT-GCGAATATATGT-GTAGAAAC-TGCCGGA-AATCGTCGTGGTATTCACTCCAGAG- 22472 || | |||||||| | ||||| || |||| || ||||| |||||| ||| |||| || Sbjct 297545 GTTAGGGAATATATCTTGTAGAGACCTGCCCGACAATCGCCGTGGTCTTCTCTCCCGAAT 297604 Query 22473 CGATGAAAACGTT-TCA-GTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACAC-TATC 22529 |||||| |||| | ||| ||||||||||| | ||| | ||| ||||| ||| || |||| Sbjct 297605 CGATGACAACGGTCTCACGTTTGCTCATGAATAACAGGGTATTAAGGGAGAAAACATATC 297664 Query 22530 CCA-TATCACCAGCTCACCGTCTTTCATTGCCATACGG-AATTCCGGATG-AGCATTCAT 22586 | | || | ||||||||||||||| |||||| | || || |||| ||| | |||| | Sbjct 297665 TCTGTGTCTCTAGCTCACCGTCTTTCGTTGCCAAAAGGAAAATCCGAATGAAAGATTCCT 297724 Query 22587 -CAGGC-GGGCAAGAATGTGAATAAAG-GCCGGATAAAACTTG-TGCTTATTTTTC-TTT 22641 |||| ||| | || |||| || ||| || ||||| || ||| |||||| ||||| ||| Sbjct 297725 GAAGGCGGGGGAGGAGTGTGGATTAAGAGCGGGATAGAATTTGTTGCTTAATTTTCTTTT 297784 Query 22642 ACGGTCTTTAAAAA 22655 | |||||||||| Sbjct 297785 TCACTCTTTAAAAA 297798 >seq1 Length=748055161 Score = 159 bits (176), Expect = 1e-34 Identities = 115/133 (86%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22201 ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT 22260 ||||| |||| |||||| ||| | |||| |||| ||||||| |||||||||||| |||| Sbjct 306544674 ACGGCCTGATCAACCTGGATCTCACGCGGAATCAACACCTTGCCGCCTTGCGTATCATAT 306544733 Query 22261 TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA 22320 |||||||||| | |||||| |||||||||||||| |||||||| ||| | ||||||| || Sbjct 306544734 TTGCCCATGGAGCAAACGGCGGCGAAGAAGTTGTGCATATTGGTCACCTATAAATCAGAA 306544793 Query 22321 CTGGTGAAACTCA 22333 ||||||||||||| Sbjct 306544794 CTGGTGAAACTCA 306544806 Score = 141 bits (156), Expect = 3e-29 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 22164 TTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC 22223 ||||||| |||||||||||| ||| ||||||||| || |||||||||||||||||||| Sbjct 247745859 TTCATTACCCATTCTGCCGACCTGGCTGCCATCACACACCGCATGATGAACCTGAATCGC 247745800 Query 22224 CAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG 22279 ||| |||||||||| ||| ||| ||||||||||||||||| | ||| |||||||| Sbjct 247745799 CAGTCGCATCAGCACGTTGGCGCGTTGCGTATAATATTTGCTCTTGGGGAAAACGG 247745744 Score = 125 bits (138), Expect = 3e-24 Identities = 111/136 (82%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 22442 GCCGGAAATCGTCGTGGTATTCACTCCAGA-GCGATGAAAACGTTT-CAGTTTGCTCATG 22499 |||||||||||| | || ||||| ||||| | ||||||||||||| ||||||||||| Sbjct 509120136 GCCGGAAATCGTTGCGGAATTCATCCCAGAAGGGATGAAAACGTTTTCAGTTTGCTCAGT 509120077 Query 22500 GAAAACGGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGC 22559 |||| || |||| | ||||||||||||||||||| ||||||| | | ||||||||| Sbjct 509120076 GAAACCGATGTATCTAGGGTGAACACTATCCCATGTCACCAGTAAGCAGGCTTTCATTGA 509120017 Query 22560 CATACGGAATTCCGGA 22575 |||| |||| ||||| Sbjct 509120016 CATAACGAATGCCGGA 509120001 >seq8 Length=312544902 Score = 140 bits (154), Expect = 1e-28 Identities = 107/124 (86%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 22323 GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGG 22382 || ||||| || ||||||||||||||||| | ||||||||||||||| | ||||||||| Sbjct 9856187 GGGGAAACGAACTCAGGGATTGGCTGAGACCAGAAACATATTCTCAATGACCCCTTTAGG 9856246 Query 22383 GAAATAGGCCAGGTTTTCACCGTAACACGCCACATC-TTGCGAATATATGTGTAGAAA-C 22440 |||| | |||||| ||||| ||| ||||||||||| | ||||||||||||||||||| | Sbjct 9856247 GAAAGACGCCAGGCTTTCATCGTCTCACGCCACATCGTGGCGAATATATGTGTAGAAACC 9856306 Query 22441 TGCC 22444 |||| Sbjct 9856307 TGCC 9856310 >seq4440 Length=15902 Score = 118 bits (130), Expect = 4e-22 Identities = 92/107 (86%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 22319 AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTT 22378 ||||||||| ||||||||||||||||||||| ||||| || ||||| ||| || ||| Sbjct 5833 AACTGGTGACACTCACCCAGGGATTGGCTGACACGAACAAACTATTCCTCATACACACTT 5774 Query 22379 TAGGGAAATAGGCCAGGTTTTCAC-CGTAACACGCCACATCTTGCGA 22424 ||||| ||||| ||||||||||| |||| ||||||||||||||||| Sbjct 5773 TAGGGCCATAGGTCAGGTTTTCACGCGTA-CACGCCACATCTTGCGA 5728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184433813545488