Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq5 163 2e-35 seq3 123 2e-23 >seq5 Length=304825324 Score = 163 bits (180), Expect = 2e-35 Identities = 419/634 (66%), Gaps = 7/634 (1%) Strand=Plus/Plus Query 111660 AATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTAT 111719 ||| || || || ||||| || | || | ||| |||||| | || || |||| || Sbjct 43288146 AATCTTGAGCTTGGGAAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTTAGTGGCTCAAT 43288205 Query 111720 GTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACC 111779 ||||| ||| ||||| |||||||| | | | || | || || | |||| || || Sbjct 43288206 ATGATTCTCATATACATGAGCATCTCCCAGAGAGTGTACAAAATCACCTGGCTTCAGGCC 43288265 Query 111780 AGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACC 111839 |||||||| ||||||||||| ||||| || |||||| |||||| | || ||||| || Sbjct 43288266 TGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGGTGAACGGCACCCC 43288325 Query 111840 TAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATA 111899 |||||||||||||| |||| || ||||||||||| || | | | | || || || Sbjct 43288326 AAGGCCCATATCTCCGGATCGCTGCTATAGCTGACAGGAAAACTCACCATTTGCTACGTA 43288385 Query 111900 AAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATA---AAGGGTCCCCA 111956 || ||||| || | || || ||||||| ||||| | | | || | ||| Sbjct 43288386 GAACTGACAGAGAGCGTGGCACAGAGGCAAGGCCATGAGAGGAAGATCTTTTGGACTCCA 43288445 Query 111957 TGCACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACATTCAA 112016 |||||||| || ||||||||| | | || || || | || ||||| || Sbjct 43288446 AGCACACATAATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCGATGACTTTTTG 43288505 Query 112017 GAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACATC-CAGTGTATGTTGCCCCAT 112075 ||| | | | |||| |||| |||||| | | |||| | ||||| ||||||| Sbjct 43288506 TAGCAGACCCACTCCTTGCCCAGAATAATCTGTGT-TCATCTCTTTGTATTCTGCCCCAA 43288564 Query 112076 AGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGAAATT 112135 | |||||||| ||||| || | | || |||| | |||| || | || || Sbjct 43288565 AATGTCTCCACTGGAAGGCACACACTGGTCCCAAACCTCCTTCTTCTCTGAGTG--AAGC 43288622 Query 112136 GCTCTCTATTCAACAAATCACTTCTAATATGAGGATTCCAAATCTTCACTCCTTTAGATG 112195 | | | ||| | |||| | || | || ||| ||| ||| || || | | Sbjct 43288623 CCAGATTGTCCAAAAGTTCACGTGACCCATTGGCATCCCAGATCGTCATCCCCTTGGCGG 43288682 Query 112196 ATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTT 112255 | | ||| | |||||||| | || ||||||||||| |||| ||| |||| || || | Sbjct 43288683 AGAGCTCCTTACCATTTGTGCAACCCCTAATAAACCACAGCAGTTCCTCCAGGACACCCT 43288742 Query 112256 TCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAA 112289 |||| |||| | ||||| || |||| ||||| Sbjct 43288743 ACCAGAACACACGCTTAGTTGTCAGCAAAGGAAA 43288776 >seq3 Length=527952102 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||| ||||||||||| ||||| || |||||| |||||||| || ||||| Sbjct 265126887 CCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGTTGAACGGCACC 265126828 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||||||||| |||| || ||||||||||| || || | | | || || Sbjct 265126827 CCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAGGAAAGCTCACCATTTGCTACG 265126768 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 || || ||||| || | || || |||||||| ||||| Sbjct 265126767 TAGAACTGACAGAGAGCGTGGCACGGAGGCAAGGCCAT 265126730 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 111660 AATTTTTAGTTTTGGAAAGGGGGTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTAT 111719 |||||| || || || || || | ||| || | |||||| | || || | || || Sbjct 37328946 AATTTTGAGCTTGGGGAAAGGTCTTTGCTCTCATGGAAGCTGAATTTTTAGGGACTCAAT 37329005 Query 111720 GTGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACC 111779 ||||| | ||| ||||| |||||||| | | || | | || || | |||| || || Sbjct 37329006 ATGATTCACATATACATGAGCATCTCCCAGAGAAGGTACAAAGTCACCTGGCTTCAGGCC 37329065 Query 111780 AGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACC 111839 ||| |||| | |||||||| ||||| || |||||| |||||| | || ||||| || Sbjct 37329066 CGTGGTGTGAGTGATCATGTAGGTGAGCAGGAAGTAACTGGCAATGCTGAACGGCACCCC 37329125 Query 111840 TAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAG 111881 | |||||||||||| ||| || ||||| ||||| || || Sbjct 37329126 GATGCCCATATCTCCAGATTGCTGGTATAGTTGACAGGAAAG 37329167 Score = 93.3 bits (102), Expect = 3e-14 Identities = 283/428 (66%), Gaps = 16/428 (4%) Strand=Plus/Plus Query 111696 AAGCTGTAATTGTAAA-GGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATACAAT 111754 |||||| |||||| | |||| || ||||| | ||| ||||| ||||||| | | | | Sbjct 405698441 AAGCTG-AATTGTTATTGGCTCAATATGATTCACATATACATGAACATCTCCCAGAGAGT 405698499 Query 111755 GGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGC-AATCATGTATGTGAGTAGACTG 111813 | || || | || || || |||||||| | ||| |||| ||||| || | Sbjct 405698500 GTGCAAAATCACTTAACTTCAGGCCTGTGATGTGAGAGAATATTGTAGGTGAGCAGGGAG 405698559 Query 111814 TAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGA 111873 ||||| | ||||| || |||| || || ||||||||||| |||| || |||||||| Sbjct 405698560 TAACTGGTGATGTTGAACAGCACCCCAAGACCCATATCTCCAGATCACTGGTATAGCTGC 405698619 Query 111874 CATGATAGTTTATTTTGTGAC-ACATAAAATTGACAAAGTACATGACAAGGAGGCAATGC 111932 || || || | || | | || ||||| || ||||| || |||| | || ||||| || Sbjct 405698620 CAGGAAAGCTCATCAT-TCACTACATAGAACTGACAGAGAGCATGGTATGGTGGCAAAGC 405698678 Query 111933 CATCCCATTCATAAAGGGTCCCCATGCAC------ACATGATCATCCTTCTGCTGTAGCG 111986 ||| || || ||| |||||| ||| || ||||||||| | | Sbjct 405698679 CATGATCTTTTGAA---TTCCAAATGCACATAATGACAAAATGATCCTTCTGTCATCAAG 405698735 Query 111987 ATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATC 112046 || || || | || ||||| || ||||| || | |||| |||| |||||| Sbjct 405698736 GTTGGTTTTGATTTTGTCAATGACTTTTTGAAGCTGATCCACTCCTTGTCCAGAATAATC 405698795 Query 112047 CGCCTGACATC-CAGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCC 112105 | | | ||| | || || ||||||| | |||||||| ||||| |||| | || | Sbjct 405698796 TGTGTTA-ATCTCTTTGAATTCTGCCCCAAAATGTCTCCACTGGAAGTCATACACTGGTC 405698854 Query 112106 CCAGATCT 112113 || |||| Sbjct 405698855 TCAAATCT 405698862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391921639385608