Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25]
5,016 sequences; 3,598,443,077 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2 113 5e-20
seq8 82.4 8e-11
>seq2
Length=541556283
Score = 113 bits (124), Expect = 5e-20
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | |||||| | ||||||||||| ||||| || ||||||||
Sbjct 197133430 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAGCCTGGTACCAAACTGA 197133371
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | ||||||||| |||||| |||||| ||||| ||||||||||| | |
Sbjct 197133370 CCAATGGGCTGCAAGAGGTTGAGATTGTTGCTGCCCACAAAATTTTGAGCCAAATTGATA 197133311
Query 152149 ATCGT 152153
|| ||
Sbjct 197133310 ATGGT 197133306
Score = 109 bits (120), Expect = 6e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| ||||| |||| ||| |||| |||||||||||| || | ||||| || ||
Sbjct 197133430 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAGCCTGGTACCAAACTGA 197133371
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| ||||||||| || |||||| ||||||||| ||||||||||| |||| |
Sbjct 197133370 CCAATGGGCTGCAAGAGGTTGAGATTGTTGCTGCCCACAAAATTTTGAGCCAAATTGATA 197133311
Query 117425 ATCGT 117429
|| ||
Sbjct 197133310 ATGGT 197133306
>seq8
Length=312544902
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|| ||||| ||||||| |||||||||||| ||||||||| ||| | || || |||||
Sbjct 285924999 GTAAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCTAGTTCCAAATTGA 285925058
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | || | | | || | ||||| || |||||||| || ||||||||||||
Sbjct 285925059 CCAATAGGTTGAAGCAAATTAACATTGTTACTTCCAACAAAGTTCTGGGCCAAGTTGACA 285925118
Query 117425 ATCGT 117429
|| ||
Sbjct 285925119 ATTGT 285925123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547181689556800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |