Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 113 5e-20 seq8 82.4 8e-11 >seq2 Length=541556283 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | ||||||||||| ||||| || |||||||| Sbjct 197133430 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAGCCTGGTACCAAACTGA 197133371 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||||||| |||||| |||||| ||||| ||||||||||| | | Sbjct 197133370 CCAATGGGCTGCAAGAGGTTGAGATTGTTGCTGCCCACAAAATTTTGAGCCAAATTGATA 197133311 Query 152149 ATCGT 152153 || || Sbjct 197133310 ATGGT 197133306 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| |||| |||||||||||| || | ||||| || || Sbjct 197133430 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCACCATGCAGCCTGGTACCAAACTGA 197133371 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||| || |||||| ||||||||| ||||||||||| |||| | Sbjct 197133370 CCAATGGGCTGCAAGAGGTTGAGATTGTTGCTGCCCACAAAATTTTGAGCCAAATTGATA 197133311 Query 117425 ATCGT 117429 || || Sbjct 197133310 ATGGT 197133306 >seq8 Length=312544902 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || ||||| ||||||| |||||||||||| ||||||||| ||| | || || ||||| Sbjct 285924999 GTAAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCTAGTTCCAAATTGA 285925058 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | | || | ||||| || |||||||| || |||||||||||| Sbjct 285925059 CCAATAGGTTGAAGCAAATTAACATTGTTACTTCCAACAAAGTTCTGGGCCAAGTTGACA 285925118 Query 117425 ATCGT 117429 || || Sbjct 285925119 ATTGT 285925123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547181689556800