Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 seq8 82.4 9e-11 >seq2 Length=541556283 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 32661 ATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATT 32720 ||||| | || |||||| || ||| | || ||||| | |||||| | ||||| | Sbjct 334509502 ATAGCTGGGGCTCTGTGGTGGTACTTTGTGTCAAAAGGAGTTGAATATTTGGATACAGTA 334509443 Query 32721 TTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTT-TGCACGTATACCACCATTT 32779 |||||||| |||| |||||| |||||||| | |||| | || || || || || | Sbjct 334509442 TTCTTCATTCTGAGGAAGAAAAACAACCAAGT-ATCTTTCCTTCATGTGTATCATCACTG 334509384 Query 32780 TACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 ||| |||||||| || | ||||| || ||||||||| | ||||||||||| Sbjct 334509383 TACTATGTTTACATTGTGGTGGATTGGCATTAAATGGGTAGCAGGAGGACA 334509333 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32832 GCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTATTACGGA 32891 |||||||||||||| || | ||||||||||| || || || |||||| ||||| || Sbjct 334503654 GCATTTTTTGGAGCTCAACTTAATTCTTTTATCCACGTGATTATGTATTCATATTATGGC 334503595 Query 32892 TTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTAACTATC 32951 ||||| ||| | || || | | | |||||| ||||||||||| |||||| ||||| Sbjct 334503594 TTAACTGCATTTGGCCCATGGATTCAGAAATATTTATGGTGGAAACGATATTTGACTATA 334503535 Query 32952 ATACA 32956 |||| Sbjct 334503534 TTACA 334503530 >seq8 Length=312544902 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACTAAA 22723 |||| | || || ||||| | | || ||||| ||||| | ||| || || | ||| Sbjct 120114791 TTCACAAATCAGCTGTGCAATCCGGTCACCCTTTTTTACTTCAAAGGTTTCTTTGCCAAA 120114732 Query 22724 ATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTAC 22783 |||||||| || || ||| | |||||| | ||||||| |||||| ||||| || ||||| Sbjct 120114731 ATTAAATAGCACTACACCAACATTTCCTCCGTAATCTTCATCTATGACACCAGCTCCTAC 120114672 Query 22784 ATCGATAAAATGATT 22798 ||| || || || || Sbjct 120114671 ATCTATGAAGTGTTT 120114657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603142980563840