Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5 316 2e-81 seq3 228 7e-55 seq2 104 2e-17 seq6 87.8 1e-12 >seq5 Length=304825324 Score = 316 bits (350), Expect = 2e-81 Identities = 446/623 (72%), Gaps = 4/623 (1%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||| || || || || | || |||||| | || || || || | | || | | Sbjct 43288157 TGGGAAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTTAGTGGCTCAATATGATTCTCAT 43288216 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | || ||||| |||||||| ||| ||||| || || || | || || |||| ||||| Sbjct 43288217 ATACATGAGCATCTCCCAGAGAGTGTACAAAATCACCTGGCTTCAGGCCTGTGATGTGAG 43288276 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| ||||| || ||||| ||||| ||| | || || ||||| || ||||| | Sbjct 43288277 CAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGGTGAACGGCACCCCAAGGCCCATAT 43288336 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC-GCTCACGTAAAACTGACAC 30076 | || || | ||| || |||||||| || | ||| || | ||| ||||| |||||||| Sbjct 43288337 CTCCGGATCGCTGCTATAGCTGACAGGAAAACTCACCATTTGCT-ACGTAGAACTGACAG 43288395 Query 30077 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30136 | ||||||||| |||| | |||||||| | ||||| || |||| || |||| Sbjct 43288396 AGAGCGTGGCACAGAGGCAAGGCCATGAGAGGAAGATCTTTTGGACTCCAAGCACACATA 43288455 Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196 ||||| | ||||| || |||||| | |||| ||| | | | ||||| ||| || || Sbjct 43288456 ATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCGATGACTTTTTGTAGCAGACCC 43288515 Query 30197 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30256 || || ||| || || |||| |||| || |||| ||||| || ||||| |||||| Sbjct 43288516 ACTCCTTGCCCAGAATAATCTGTGTTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCAC 43288575 Query 30257 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30316 ||||| | |||| ||||||| |||| ||||| ||| | ||||||| |||||| Sbjct 43288576 TGGAAGGCACACACTGGTCCCAAACCTCCTTCTTCTCTGAG--TGAAGCCCAGATTGTCC 43288633 Query 30317 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTG 30376 |||| || | || || ||||| ||||||||| | | |||||| | |||||||| || Sbjct 43288634 AAAAGTTCACGTGACCCATTGGCATCCCAGATCGTCATCCCCTTGGCGGAGAGCTCCTTA 43288693 Query 30377 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30436 |||||| | || || | ||||||||||| ||||||| ||| ||| ||| || || Sbjct 43288694 CCATTTGTGCAACCCCTAATAAACCACAGCAGTTCCTCCAGGACACCCTACCAGAACACA 43288753 Query 30437 CTCTTGGTCGTGAGGAGGGGAAA 30459 | ||| || || || | ||||| Sbjct 43288754 CGCTTAGTTGTCAGCAAAGGAAA 43288776 >seq3 Length=527952102 Score = 228 bits (252), Expect = 7e-55 Identities = 358/506 (71%), Gaps = 6/506 (1%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 |||| || ||||| |||| | |||||| | || || | || | | || || | Sbjct 37328957 TGGGGAAAGGTCTTTGCTCTCATGGAAGCTGAATTTTTAGGGACTCAATATGATTCACAT 37329016 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | || ||||| |||||||| | ||||| || || || | || || ||| ||||| Sbjct 37329017 ATACATGAGCATCTCCCAGAGAAGGTACAAAGTCACCTGGCTTCAGGCCCGTGGTGTGAG 37329076 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 |||||||| ||||| || |||| ||||| ||| | || || ||||||| ||||| | Sbjct 37329077 TGATCATGTAGGTGAGCAGGAAGTAACTGGCAATGCTGAACGGCACCCCGATGCCCATAT 37329136 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGT-CGCTCACGTAAAACTGACAC 30076 | || || |||||| || ||||| || |||||||||| | || ||||| ||| |||| Sbjct 37329137 CTCCAGATTGCTGGTATAGTTGACAGGAAAGCTCTCCGTTCACT-ACGTAGAACGGACAG 37329195 Query 30077 ATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACG 30136 | || ||||| ||||| | |||||||| | ||||| || ||| | ||||||| Sbjct 37329196 AGAGC-TGGCATGGAGGCAAGGCCATGAGAGGAAGATCTTTTGGATTCTAAGCGCACATA 37329254 Query 30137 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 30196 ||||| | ||||| || |||||| | |||| ||| | | |||| ||||||||| Sbjct 37329255 ATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCAGTGAC--TTTGTAGCTGATCC 37329312 Query 30197 ACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCAC 30256 || || ||| || || |||| |||| || |||| ||||| || ||||| |||||| Sbjct 37329313 ACTCCTTGCCCAGAATAATCTGTGTTCATCTCTCTGTATTCTGCCCCAAAATGTCTCCAC 37329372 Query 30257 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30316 ||||| || ||| || |||||| ||||| ||||| ||||| ||||||| |||||| Sbjct 37329373 TGGAAGCCATAC-CCTGTCCCAAATCTCCTTCTTCTCTGTGAGTGAAGCCCAAGTTGTCC 37329431 Query 30317 AAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || | | || ||||| || Sbjct 37329432 AAAAACTCACACAACCCATTGGCATC 37329457 Score = 199 bits (220), Expect = 3e-46 Identities = 468/701 (67%), Gaps = 24/701 (3%) Strand=Plus/Plus Query 29722 TGAGCATCAGACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGA 29781 || || ||| |||||||| |||| | |||| ||||||| ||| || |||| Sbjct 405698301 TGGGCTTCACACTGCCATATCCATCTTAATGGTCCAGTGAGGGTTGTAGCCTTCCATCAG 405698360 Query 29782 GAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 29841 ||| ||||| ||||| ||||| || | | | ||| ||| | || | | |||| Sbjct 405698361 GAAGTCCTCAGCCTTGAAGTCATC-ATTTTTTACACTTTCCAGAGAATTTTGAACTTGGG 405698419 Query 29842 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGAC 29901 || ||| | || || || |||||| | | | || || | | || || || || Sbjct 405698420 GAAAGGTTTTGGTTCTTGCTGAAGCTGAATTGTTATTGGCTCAATATGATTCACATATAC 405698479 Query 29902 GTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29961 ||| | |||||||| ||| |||| || | | || || |||| ||||| | Sbjct 405698480 ATGAACATCTCCCAGAGAGTGTGCAAAATCACTTAACTTCAGGCCTGTGATGTGAGAGAA 405698539 Query 29962 CAT-GTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCC 30020 || ||| ||||| || ||||| |||| |||||| || | ||||| || ||||| || | Sbjct 405698540 TATTGTAGGTGAGCAGGGAGTAACTGGTGATGTTGAACAGCACCCCAAGACCCATATCTC 405698599 Query 30021 CCGACCTCTGGTAGAGCTGACACGAGAGCTC-TCCGTCGCTCACGTAAAACTGACACATG 30079 | || | |||||| ||||| || || ||||| || || || || || |||||||| | Sbjct 405698600 CAGATCACTGGTATAGCTGCCAGGAAAGCTCATCATTCACT-ACATAGAACTGACAGAGA 405698658 Query 30080 GCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATG 30139 || ||| | || || | |||||||| ||||| | ||||| ||||| ||| Sbjct 405698659 GCATGGTATGGTGGCAAAGCCATGA--------TCTTTTGAATTCCAAATGCACATAATG 405698710 Query 30140 A--------TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 30191 | | | ||||| || ||||| | |||| ||| | | | ||||| |||| Sbjct 405698711 ACAAAATGATCCTTCTGTCATCAAGGTTGGTTTTGATTTTGTCAATGACTTTTTGAAGCT 405698770 Query 30192 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCC 30251 ||||||| || || || || |||| | || || || | ||||| || ||||| | Sbjct 405698771 GATCCACTCCTTGTCCAGAATAATCTGTGTTAATCTCTTTGAATTCTGCCCCAAAATGTC 405698830 Query 30252 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 30311 |||||||||| | ||||| |||| || ||| ||||| ||||| ||||||| | Sbjct 405698831 TCCACTGGAAGTCATACACTGGTCTCAAATCT---TCTTCTCTGTGAGTGAAGCCCAGGT 405698887 Query 30312 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCT 30371 | |||||||| | || || ||||| ||||||||||| ||||| || ||||||||| Sbjct 405698888 T-TCCAAAAATTAATGTGACCCATTGGCATCCCAGATCTTCACCCCTTTGGCAGAGAGCT 405698946 Query 30372 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30412 | || |||||| | || || | |||| |||||| ||| Sbjct 405698947 CCTTACCATTTGTGCAACCCCTAATAAACCCCAGCAGTTCC 405698987 Score = 141 bits (156), Expect = 8e-29 Identities = 132/165 (80%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| |||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 265126890 AGGCCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGTTGAACGGC 265126831 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTC-GCT 30060 |||||||| ||||| || || || | |||||| |||||||| || ||||| || | ||| Sbjct 265126830 ACCCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAGGAAAGCTCACCATTTGCT 265126771 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| |||||||| | |||||||||||||| | |||||||| Sbjct 265126770 -ACGTAGAACTGACAGAGAGCGTGGCACGGAGGCAAGGCCATGAG 265126727 Score = 129 bits (142), Expect = 5e-25 Identities = 121/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || |||| ||||| || ||||| ||||||||||| || ||||| ||||||| | Sbjct 265123302 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAAT 265123243 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| ||||| || || || |||| ||||||||||| || | || || ||||| | Sbjct 265123242 CTCCTTCTTCTCTCTGAGTGAGGCCCAGGTTGTCCAAAAATTCACGTGACCCATTGGCAT 265123183 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT 30375 |||||||||| |||||||| |||||||||| || Sbjct 265123182 CCCAGATCTTCACCCCCTTGGCAGAGAGCTCCTT 265123149 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || ||||| || ||||| || || |||||| | | |||| | ||| || || Sbjct 227415515 TTCAGTTCTCTGCTAAGAACTACATTAATTCTGTCTTTTAATGGTCGACACTTCTCAGGA 227415456 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| |||||| | ||||||||||||| ||||| |||||| Sbjct 227415455 ATGGAGAACCAGGTCTTTTTCCCCATTATCACCAGATTCTGTTTGCCT 227415408 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 30338 GCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACG 30397 || ||||||||||| |||||||| |||||||||| || |||||| | || || | Sbjct 37330256 GCATCCCAGATCTTCACCCCCTTGGCAGAGAGCTCCTTACCATTTGTGCAACCCCTTATA 37330315 Query 30398 AACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGA 30457 ||||| ||||| |||||| |||| ||||||| || || |||||| || || | ||| Sbjct 37330316 AACCAGAGCAGTTCCTCCCCGACACCCTTCCAGAACACATGCTTGGTTGTCAGCAAAGGA 37330375 Query 30458 AA 30459 || Sbjct 37330376 AA 37330377 >seq2 Length=541556283 Score = 104 bits (114), Expect = 2e-17 Identities = 353/555 (64%), Gaps = 70/555 (13%) Strand=Plus/Minus Query 29896 GTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29955 ||| || ||||| |||||||| || | ||||| || || || | || || |||| ||| Sbjct 459841151 GTATACATGAGCATCTCCCAGAGTGGGTACAAAATCACCTGGCTTCAGGCCTGTGATGTG 459841092 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 || ||| | | ||||| || | ||| |||| |||||| || | | ||||| ||||| Sbjct 459841091 AGTGATCTT--AGGTGAGCAGGGTGTAACTGGTGATGTTGAACAGCATTCCGAGGCCCAT 459841034 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30075 || || || |||||| |||||||| || ||||| | | |||| |||| ||| Sbjct 459841033 ATCTCCGGATTGCTGGTATAGCTGACAGGAAAGCTCATCAT---TCACT---AACTAACA 459840980 Query 30076 CATGGCGTGGCACGGAGG-AAGA-GCCATGAGGCCCAAG-TCTTTGGGGTTCCAGGCGCA 30132 | || |||||| |||| ||| | | |||| ||| ||||| || ||||| || || Sbjct 459840979 GAGAGCATGGCACAGAGGCAAGCCGGCGAGAGG---AAGATCTTTCGGATTCCAAGCACA 459840923 Query 30133 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 30192 || | ||| | ||||| || |||||| |||| Sbjct 459840922 CATAACGATCCTTCTGTCATCAGGGTTG--------------------GTTT-------- 459840891 Query 30193 ATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 30252 | |||| |||| || |||| ||||| || ||||| || Sbjct 459840890 --------------------AATCTGTGTTCATCTCTTTGTATTCTGCCCCTAAATGTCT 459840851 Query 30253 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 30312 ||||||||| || | || ||| ||| ||| ||||| |||| ||||| | || Sbjct 459840850 CCACTGGAAACCACAGACTGGTTCCAAATCT---TCTTCGTTGTGAGGGAAGCTCAGGTT 459840794 Query 30313 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTC 30372 |||||||||||| | || | || || ||||| ||| || || | ||||| || Sbjct 459840793 GTCCAAAAAGTCACGCGACTCATTAGCACTCCAGAACTTCAC-----TCGCGGAGAGTTC 459840739 Query 30373 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30432 || |||||| | || || | |||||||| || ||||||| ||| ||||| | || Sbjct 459840738 CTTATCATTTGTGCAGCCCCTAATAAACCACAGGAGTTCCTCCAGGACTCCCTTCAAGAA 459840679 Query 30433 GACCCTCTTGGTCGT 30447 || | |||||| || Sbjct 459840678 CACACACTTGGTTGT 459840664 >seq6 Length=292091736 Score = 87.8 bits (96), Expect = 1e-12 Identities = 172/250 (69%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 110371 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATC 110430 ||||| | |||| ||||| || || || || || || ||||| || ||||| || || Sbjct 196518405 GCCAGATAATGAACTCCATGAGGAGGTTCCTTCAGTTCTCTGCTAAGAACTACATTAATT 196518464 Query 110431 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 110490 |||||| | | ||| | ||| || || ||||||||||| ||||| || ||||||||| Sbjct 196518465 CTGTCTTTTAATGGTTGACACTTCTCAGGAATGGAGAACCAGGTCTTCCTTCCCATTATC 196518524 Query 110491 ACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAA 110550 || | |||| || | | ||||||| || | ||| | | | |||| || || Sbjct 196518525 ACTAGATTCTATTTACATTCTACTGAAGGAGTTGTGGTGATTGTCTGGAAGTACTTGAAT 196518584 Query 110551 TCTTTGC--AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG- 110607 || || | ||| | || |||| ||||| | || || ||||| ||||||||| Sbjct 196518585 TCGTTCCTGAAAAT------GG--GCCAGGGCAGGTTCCCATTCTTCCCAATGCCCATGT 196518636 Query 110608 TCT-GGACAC 110616 ||| |||||| Sbjct 196518637 TCTGGGACAC 196518646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406285561229472