Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3 100 2e-16 >seq3 Length=527952102 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || || ||| || || || ||||| || || || Sbjct 475401053 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 475400994 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || ||||||||||| || | | ||| ||||| || || Sbjct 475400993 AGGGTACGACCATCTTCCAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGG 475400934 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| |||| |||| || || | ||| || || | |||||| Sbjct 475400933 ATGCCTTCTTTGTCCTGGATC-TTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCAC 475400875 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| ||| || || || || || || || |||||||| ||||||||| Sbjct 475400874 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 475400826 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | ||||| || | ||| || || || ||||| || || || Sbjct 475400826 GCCACCCCTGAGACGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGA 475400767 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || ||||||||||| || | | ||| ||||| || || Sbjct 475400766 CAGGGTACGACCATCTTCTAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGG 475400707 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| |||| |||| || || | ||| ||||| | || | Sbjct 475400706 GATGCCTTCTTTGTCTTGGATC-TTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTA 475400648 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || |||||||| || || || |||||||| ||||||||| Sbjct 475400647 CTTCAAGGGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCATG 475400598 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | ||||| || | ||| || || || ||||| || || || Sbjct 475400369 CCACCTCTGAGACGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 475400310 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || ||||||||||| || | | ||| ||||| || || Sbjct 475400309 AGGGTACGACCATCTTCCAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGGG 475400250 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| |||| |||| || || | ||| || || | |||||| Sbjct 475400249 ATGCCTTCTTTGTCCTGGATC-TTTGCCTTGACATTCTCAATGGTATCACTGGGCTCCAC 475400191 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | ||| || || || || || | || |||||||| |||||||| Sbjct 475400190 TTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 475400143 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || ||||| | || || || ||||| || || || ||||| || || || Sbjct 475400598 GCCACCCCTGAGACGAAGGACTAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGA 475400539 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || ||||||||||| || | | ||| ||||| || || Sbjct 475400538 CAGGGTGCGACCATCTTCTAGCTGCTTACCGGCAAAGATCAGTCTCTGCTGGTCTGGGGG 475400479 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| |||| |||| || || | ||| ||||| | || | Sbjct 475400478 GATGCCTTCTTTGTCTTGGATC-TTTGCCTTGACATTCTCAATGGTGTCACTGGGTTCTA 475400420 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || || || || || || || ||||| || |||||||| Sbjct 475400419 CTTCAAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 475400371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314710359792728