Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq6 143 2e-29 seq3 123 2e-23 seq5 114 1e-20 >seq6 Length=292091736 Score = 143 bits (158), Expect = 2e-29 Identities = 354/532 (67%), Gaps = 14/532 (3%) Strand=Plus/Minus Query 2156 CTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAA 2215 |||| || | || ||||||||||| || || || || ||||| ||||| | | | | Sbjct 196518648 CTGTGTCCCAGAACATGGGCATTGGGAAGAATGGGAACCTGCCCTGGCCCATTTTCAGGA 196518589 Query 2216 ATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAATG 2272 | ||||| || | || || | ||| || | || |||| || | ||| ||||| Sbjct 196518588 ACGAATTCAAGTACTTCCAGACAATCACCACAACTCCTTCAGTAGAATGTAAATAGAATC 196518529 Query 2273 TTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAG---CAGGCCTTTGA 2329 | || || |||||||| ||||| ||||| || |||| | | ||| || || || | Sbjct 196518528 TAGTGATAATGGGAAGGAAGACCTGGTTCTCCATTCC--TGAGAAGTGTCAA-CCATTAA 196518472 Query 2330 ACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACT 2389 | ||||||| ||| | ||||| || ||| | || || || || || | ||| | ||| | Sbjct 196518471 AAGACAGAATTAATGTAGTTCTTAGCAGAGAACTGAAGGAACCTCCTCATGGAGTTCATT 196518412 Query 2390 TTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACA 2449 | | || | ||| | ||| | || | | || | | |||||| || ||| | Sbjct 196518411 ATCTGGCCAGCAGTCTGGATGATGCATTAAACCTTCTCGAACTTCCAGAACTAGCAGATA 196518352 Query 2450 GGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTACAAGAT 2509 |||||| | | ||| |||| |||| || || |||| ||| |||| || | | | Sbjct 196518351 AGGTGGACATGCTTTAGATAGTTGGAGGCAGCTCTGCTTATAAGGAAGTAATGAATAAAC 196518292 Query 2510 CTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACT 2569 || | | ||| |||||| ||| ||| ||| ||||| | ||||| |||| |||| | Sbjct 196518291 CTGGTCATCAGCAACTGTTTATAATAAGAATTTTGCAAGAGTTTGAGAGTGACACATTTT 196518232 Query 2570 TCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTC-- 2627 ||||||||||| |||| | ||||| |||| | |||| | || |||| Sbjct 196518231 TCCCAGAAATTGATCTAAAGAAATATAAACTCCAA---GAATATTCAACTGTTAGTATGT 196518175 Query 2628 TGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGAAAAA 2679 || || ||||||||||| || ||| || |||||||| ||||||||||| Sbjct 196518174 TGATGTCCAAGAAGAAAAAGGCATTCAGTATAAATTTGAAGTATATGAAAAA 196518123 >seq3 Length=527952102 Score = 123 bits (136), Expect = 2e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 3244 AGTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGA 3303 ||| || || ||||| ||| | |||||||| ||||||||| | || || || |||||||| Sbjct 143338777 AGTGGTAGAGGAGCTGTTCAGGGATGGGGTGAACTGGGGGAGGATCGTGGCCTTCTTTGA 143338718 Query 3304 GTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAA 3363 |||||||||||||||||||||||| |||||||| | | || | |||| || |||| Sbjct 143338717 GTTTGGTGGTGTTATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAG 143338658 Query 3364 CATTGCCGCGTGGATGACAGA 3384 ||||||| |||||||| || Sbjct 143338657 CATTGCCCTATGGATGACTGA 143338637 Score = 98.7 bits (108), Expect = 8e-16 Identities = 173/251 (69%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 118445 GCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCC 118504 |||| | || || || | ||| || | |||||| ||||||| ||| ||||||||||| | Sbjct 37328972 GCTCTCATGGAAGCTGAATTTTTAGGGACTCAATATGATTCACATATACATGAGCATCTC 37329031 Query 118505 CAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCA 118564 | | | | ||| || ||||| || | || || || ||||| |||||||| || | Sbjct 37329032 CCAGAGAAGGTACAAAGTCACCTGGCTTCAGGCCCGTGGTGTGAGTGATCATGTAGGTGA 37329091 Query 118565 ACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGT 118624 || ||| ||||| | | || || || || | ||||| ||| | ||| ||||| Sbjct 37329092 GCAGGAAGTAACTGGCAATGCTGAACGGCACCCCGATGCCCATATCTCCAGATTGCTGGT 37329151 Query 118625 ACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAG 118684 | | ||| || || ||||| ||||| | || || ||| ||| | || || ||||||| Sbjct 37329152 ATAGTTGACAGGAAAGCTCTCCGTTCACTACGTAGAACGGACAGA-GAGCTGGCATGGAG 37329210 Query 118685 GCAGAACCATG 118695 ||| ||||| Sbjct 37329211 GCAAGGCCATG 37329221 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||||||||||||||| || | || ||| ||||| | || || || Sbjct 265126890 AGGCCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGTTGAACGGC 265126831 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | |||| |||||| | || || || ||||| || ||||| Sbjct 265126830 ACCCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAGGAAAGCTCACCATTTGCT 265126771 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || || ||||||| | ||| || ||||||| ||||| Sbjct 265126770 ACGTAGAACTGACAGAGAGCGTGGCACGGAGGCAAGGCCATG 265126729 >seq5 Length=304825324 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | ||| ||||||||||| |||||| ||| ||||||||||| || | | ||| Sbjct 43288183 AGCTGAATTTTTAGTGGCTCAATATGATTCTCATATACATGAGCATCTCCCAGAGAGTGT 43288242 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | || ||||| || | || ||||| | ||||||||||||||| || | || ||| Sbjct 43288243 ACAAAATCACCTGGCTTCAGGCCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAA 43288302 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | | || || || || || ||||| ||| | |||| ||| || | || || Sbjct 43288303 CTGGCAATGGTGAACGGCACCCCAAGGCCCATATCTCCGGATCGCTGCTATAGCTGACAG 43288362 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGAC 118666 || | ||| || ||||| || || ||||||| Sbjct 43288363 GAAAACTCACCATTTGCTACGTAGAACTGAC 43288393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414451461997024