Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 4e-13 >seq2 Length=541556283 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| ||||| || || || || || | || || | | || || Sbjct 253694379 ACCAGATGGAGGGTGGGTTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCATCTTCC 253694438 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||| | |||||||| || | ||||||||||| ||| | || ||||||||| | Sbjct 253694439 AGCTGCTTGACTGCAAATATGAGCCTCTGCTGGTCGG-GGGGATGCCCTCTTTGTCTTGG 253694497 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| || | || | | || || || | |||||| |||| ||||| | || Sbjct 253694498 ATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 253694557 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || |||||||| ||||| Sbjct 253694558 CCTGTCAGGGTCTTCACAAAGATCTGCAT 253694586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429519340803608