Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 7e-16 seq1 98.7 7e-16 seq2 95.1 8e-15 >seq3 Length=527952102 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || ||||| || ||| Sbjct 475401055 ATGCAGATATTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTAGAACCCAGT 475401114 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 475401115 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAAGAAGGCATCCCTCCAGACCA 475401173 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || |||||||| | || || | || ||||| Sbjct 475401174 GCAGAGACTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 475401233 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| ||||| Sbjct 475401234 CATCCAAAAAGAATCCAC 475401251 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || ||||| ||||| || ||||| || ||| Sbjct 475400599 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACCCTTGAAGTAGAACCCAGT 475400658 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 475400659 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCCCCAGACCA 475400717 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || ||||| | || || | || ||||| Sbjct 475400718 GCAGAGACTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTCGTACCCTGTCTGACTACAA 475400777 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| ||||| || || || || Sbjct 475400778 CATCCAGAAAGAATCCACCTTGCACTTGGT 475400807 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || || || || ||||| || ||| Sbjct 475400143 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAAGTGGAGCCCAGT 475400202 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 475400203 GATACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAAGAAGGCATCCCCCCAGACCA 475400261 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || |||||||| | || || | || ||||| Sbjct 475400262 GCAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 475400321 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| ||||| || || || || Sbjct 475400322 CATCCAGAAAGAATCCACCTTGCACTTGGT 475400351 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || || || || ||||| || ||| Sbjct 475400371 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 475400430 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 475400431 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCCCCAGACCA 475400489 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || ||||| | ||||| | || ||||| Sbjct 475400490 GCAGAGACTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAA 475400549 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| || || | || ||||| Sbjct 475400550 CATCCAGAAAGAATCAACTCTTCACTTAGT 475400579 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || ||||| || ||| Sbjct 475399915 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAAGTGGAGCCCAGT 475399974 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 475399975 GATACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAAGAAGGCATCCCCCCAGACCA 475400033 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || ||||| | || || | || ||||| Sbjct 475400034 GCAGAGACTGATCTTTGCCGGGAAGCAGCTAGAAGATGGTCGTACCCTGTCTGACTACAA 475400093 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 475400094 CATCCAGAAAGAATCCAC 475400111 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || ||||| || ||||| || ||| Sbjct 475400827 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 475400886 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 475400887 GATACCATTGAGAATGTCAAGGCAAAGA-TCCAGGACAAAGAAGGCATCCCCCCAGACCA 475400945 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || |||||||| | || || | || ||||| Sbjct 475400946 GCAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 475401005 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 475401006 CATCCAGAAAGAATCCAC 475401023 >seq1 Length=748055161 Score = 98.7 bits (108), Expect = 7e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||| | || || | ||||| || || |||||||| || ||||| | | Sbjct 532227479 ATGCAGATTTTCATAAAGACTTTGACGGGGAAGACCATCACTCTTGAGGTTGAACCGTCC 532227538 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || || || || || |||||| | || || |||||| Sbjct 532227539 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCTCCTGATCAA 532227598 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| ||||| || ||||||| | ||| |||||| | |||||| Sbjct 532227599 CAAAGATTGATTTTTGCTGGCAAGCAGTTGGAAGATGGACGTACTTTATCTGCCTACAAC 532227658 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGG 23834 || || || ||||| || | ||| | ||| | ||| | || || Sbjct 532227659 ATTCAGAAGGAGTCTACCCTTCATCTTGTTCTGAGGCTTCGGGG 532227702 >seq2 Length=541556283 Score = 95.1 bits (104), Expect = 8e-15 Identities = 144/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || |||||||| || | || ||| Sbjct 253276141 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACTCTTGATATAGAGCCCAGT 253276082 Query 23671 -GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | ||| | ||| ||||| ||||| |||||| | || | |||||| Sbjct 253276081 TGATACTATCAAAAACATCAAAGTCAAAATCCAGGACAAGGAAGGTATCCCACTAGATCA 253276022 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||| || ||||| || ||||| || ||||| || | ||| | || ||||| Sbjct 253276021 ACAACATTTGATTTTTGCTGGAAAACAGCTAGAAGATGACCAGACTCTCTCTGACTACAA 253275962 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || ||||||||||| || || Sbjct 253275961 CATCCAGAAAGAGTCCACTTTCCA 253275938 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || || || || || || || ||||| || ||| Sbjct 204602194 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 204602135 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | | ||||||||||| | || ||||| || Sbjct 204602134 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAAGAAGGCATCCCCCCAGACCA 204602076 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || |||||||| | || || | || ||||| Sbjct 204602075 GCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAA 204602016 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| |||||||| ||||| Sbjct 204602015 CATCCAAAAAGAATCCAC 204601998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337988936628128