Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5 284 1e-71 seq3 188 6e-43 seq2 120 2e-22 >seq5 Length=304825324 Score = 284 bits (314), Expect = 1e-71 Identities = 434/623 (70%), Gaps = 4/623 (1%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||| || || || || | || |||||||| | || || || | || | | Sbjct 43288157 TGGGAAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTTAGTGGCTCAATATGATTCTCAT 43288216 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | || |||||||||||||| | ||| ||||| || || || | || || |||| ||||| Sbjct 43288217 ATACATGAGCATCTCCCAGAGAGTGTACAAAATCACCTGGCTTCAGGCCTGTGATGTGAG 43288276 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | |||||||| ||||| || ||||| ||||| ||| | || |||||||| || ||||| | Sbjct 43288277 CAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGGTGAACGGCACCCCAAGGCCCATAT 43288336 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GTCGCTCACGTAAAACTGACAC 29848 | || || | ||| || ||||| || || | ||| || | ||| ||||| |||||||| Sbjct 43288337 CTCCGGATCGCTGCTATAGCTGACAGGAAAACTCACCATTTGCT-ACGTAGAACTGACAG 43288395 Query 29849 ATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACG 29908 | || |||||| |||| | |||||||||| | ||||| || |||| ||||||| Sbjct 43288396 AGAGCGTGGCACAGAGGCAAGGCCATGAGAGGAAGATCTTTTGGACTCCAAGCACACATA 43288455 Query 29909 ATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCC 29968 ||||| | ||||| || |||||| | |||| ||| | | | ||||| ||| || || Sbjct 43288456 ATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCGATGACTTTTTGTAGCAGACCC 43288515 Query 29969 ACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCAC 30028 || || ||| || || |||| | ||||| |||||| Sbjct 43288516 ACTCCTTGCCCAGAATAATCTGTGTTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCAC 43288575 Query 30029 TGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCC 30088 ||||| | |||| ||||||| |||| ||||| ||| | ||||||| |||||| Sbjct 43288576 TGGAAGGCACACACTGGTCCCAAACCTCCTTCTTCTCTGAG--TGAAGCCCAGATTGTCC 43288633 Query 30089 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30148 |||| || | || || ||||| ||||||||| | | |||||| |||||||||| || Sbjct 43288634 AAAAGTTCACGTGACCCATTGGCATCCCAGATCGTCATCCCCTTGGCGGAGAGCTCCTTA 43288693 Query 30149 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30208 |||||| | || || | ||||||||||| ||||||| ||| ||| ||| || || Sbjct 43288694 CCATTTGTGCAACCCCTAATAAACCACAGCAGTTCCTCCAGGACACCCTACCAGAACACA 43288753 Query 30209 CTCTTGGTCGTGAGGAGGGGAAA 30231 | ||| || || || | ||||| Sbjct 43288754 CGCTTAGTTGTCAGCAAAGGAAA 43288776 >seq3 Length=527952102 Score = 188 bits (208), Expect = 6e-43 Identities = 309/447 (69%), Gaps = 6/447 (1%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 || || |||||||||||||| | | ||||| || || || | || || ||| |||| Sbjct 37329016 TATACATGAGCATCTCCCAGAGAAGGTACAAAGTCACCTGGCTTCAGGCCCGTGGTGTGA 37329075 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 | |||||||| ||||| || |||| ||||| ||| | || |||||||||| ||||| Sbjct 37329076 GTGATCATGTAGGTGAGCAGGAAGTAACTGGCAATGCTGAACGGCACCCCGATGCCCATA 37329135 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCG-TCGCTCACGTAAAACTGACA 29847 || || || |||||| || || || || ||||||||| || || ||||| ||| |||| Sbjct 37329136 TCTCCAGATTGCTGGTATAGTTGACAGGAAAGCTCTCCGTTCACT-ACGTAGAACGGACA 37329194 Query 29848 CATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACAC 29907 | || ||||| ||||| | |||||||||| | ||||| || ||| | || |||| Sbjct 37329195 GAGAGC-TGGCATGGAGGCAAGGCCATGAGAGGAAGATCTTTTGGATTCTAAGCGCACAT 37329253 Query 29908 GATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATC 29967 ||||| | ||||| || |||||| | |||| ||| | | |||| |||||||| Sbjct 37329254 AATGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCAGTGAC--TTTGTAGCTGATC 37329311 Query 29968 CACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCA 30027 ||| || ||| || || |||| | ||||| ||||| Sbjct 37329312 CACTCCTTGCCCAGAATAATCTGTGTTCATCTCTCTGTATTCTGCCCCAAAATGTCTCCA 37329371 Query 30028 CTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTC 30087 |||||| || ||| || |||||| ||||| ||||| ||||| ||||||| ||||| Sbjct 37329372 CTGGAAGCCATAC-CCTGTCCCAAATCTCCTTCTTCTCTGTGAGTGAAGCCCAAGTTGTC 37329430 Query 30088 CAAAAAGTCTCTGGAACCGTTGGCGTC 30114 |||||| || | | || ||||| || Sbjct 37329431 CAAAAACTCACACAACCCATTGGCATC 37329457 Score = 172 bits (190), Expect = 4e-38 Identities = 451/689 (65%), Gaps = 24/689 (3%) Strand=Plus/Plus Query 29506 TGCCATCCTCATCCTTATGGAGGGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGC 29565 |||||| |||| | |||| |||||||| |||||| |||| ||| ||||| || Sbjct 405698313 TGCCATATCCATCTTAATGGTCCAGTGAGGGTTGTAGCCTTCCATCAGGAAGTCCTCAGC 405698372 Query 29566 CTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29625 ||| ||||| || | | | ||| ||| | || | | |||| || ||| | || Sbjct 405698373 CTTGAAGTCATC-ATTTTTTACACTTTCCAGAGAATTTTGAACTTGGGGAAAGGTTTTGG 405698431 Query 29626 CTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCC 29685 || || |||||||| | | || || | || | | || || ||| ||||||| Sbjct 405698432 TTCTTGCTGAAGCTGAATTGTTATTGGCTCAATATGATTCACATATACATGAACATCTCC 405698491 Query 29686 CAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCAT-GTACGTGA 29744 ||| | ||| |||| || | | || || |||| ||||| | || ||| |||| Sbjct 405698492 CAGAGAGTGTGCAAAATCACTTAACTTCAGGCCTGTGATGTGAGAGAATATTGTAGGTGA 405698551 Query 29745 GGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGT 29804 | || ||||| |||| |||||| || ||||||| || ||||| || || || | ||||| Sbjct 405698552 GCAGGGAGTAACTGGTGATGTTGAACAGCACCCCAAGACCCATATCTCCAGATCACTGGT 405698611 Query 29805 AGAGCTGGCACGAGAGCTC-TCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGA 29863 | ||||| || || ||||| || || || || || |||||||| | |||||| | || Sbjct 405698612 ATAGCTGCCAGGAAAGCTCATCATTCACT-ACATAGAACTGACAGAGAGCATGGTATGGT 405698670 Query 29864 GGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAG--GCACA------CACGATGATGC 29915 || | ||||||| ||||| | ||||| ||||| || ||||| | Sbjct 405698671 GGCAAAGCCATGA--------TCTTTTGAATTCCAAATGCACATAATGACAAAATGATCC 405698722 Query 29916 GCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCA 29975 ||||| || ||||| | |||| ||| | | | ||||| ||||||||||| || Sbjct 405698723 TTCTGTCATCAAGGTTGGTTTTGATTTTGTCAATGACTTTTTGAAGCTGATCCACTCCTT 405698782 Query 29976 TCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACC 30035 || || || |||| | ||||| ||||||||||| Sbjct 405698783 GTCCAGAATAATCTGTGTTAATCTCTTTGAATTCTGCCCCAAAATGTCTCCACTGGAAGT 405698842 Query 30036 CGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGT 30095 | ||||| |||| || ||| ||||| ||||| ||||||| || |||||||| | Sbjct 405698843 CATACACTGGTCTCAAATCT---TCTTCTCTGTGAGTGAAGCCCAGGTT-TCCAAAAATT 405698898 Query 30096 CTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTG 30155 || || ||||| ||||||||||| ||||| || | |||||||| || |||| Sbjct 405698899 AATGTGACCCATTGGCATCCCAGATCTTCACCCCTTTGGCAGAGAGCTCCTTACCATTTG 405698958 Query 30156 TGGACCCTCTGACGAACCACAGCAGCTCC 30184 || | || || | |||| |||||| ||| Sbjct 405698959 TGCAACCCCTAATAAACCCCAGCAGTTCC 405698987 Score = 143 bits (158), Expect = 2e-29 Identities = 133/166 (80%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| |||||| |||||||| ||||| || ||||| ||||| ||||| || ||| Sbjct 265126890 AGGCCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGTTGAACGGC 265126831 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTC-GCT 29832 |||||||| ||||| || || || | |||||| ||||| || || ||||| || | ||| Sbjct 265126830 ACCCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAGGAAAGCTCACCATTTGCT 265126771 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| |||||||| | || ||||||||||| | |||||||||| Sbjct 265126770 -ACGTAGAACTGACAGAGAGCGTGGCACGGAGGCAAGGCCATGAGA 265126726 Score = 111 bits (122), Expect = 1e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| ||||||||||| || ||||| ||||||| ||||| ||||| || || || | Sbjct 265123279 AAATGTCTCCACTGGAAGCCATACACTGGTCCCAAATCTCCTTCTTCTCTCTGAGTGAGG 265123220 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||| || | || || ||||| ||||||||||| |||||||| | Sbjct 265123219 CCCAGGTTGTCCAAAAATTCACGTGACCCATTGGCATCCCAGATCTTCACCCCCTTGGCA 265123160 Query 30137 GAGAGCTCTTT 30147 |||||||| || Sbjct 265123159 GAGAGCTCCTT 265123149 >seq2 Length=541556283 Score = 120 bits (132), Expect = 2e-22 Identities = 187/265 (71%), Gaps = 8/265 (3%) Strand=Plus/Minus Query 29668 GTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 29727 ||| || |||||||||||||| ||| | ||||| || || || | || || |||| ||| Sbjct 459841151 GTATACATGAGCATCTCCCAGAGTGGGTACAAAATCACCTGGCTTCAGGCCTGTGATGTG 459841092 Query 29728 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCAT 29787 || ||| || ||||| || | ||| |||| |||||| || ||| ||||| ||||| Sbjct 459841091 AGTGATC--TTAGGTGAGCAGGGTGTAACTGGTGATGTTGAACAGCATTCCGAGGCCCAT 459841034 Query 29788 GTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 29847 || || || |||||| ||||| || || |||| | || |||| |||| ||| Sbjct 459841033 ATCTCCGGATTGCTGGTATAGCTGACAGGAAAGCT---CATCATTCAC---TAACTAACA 459840980 Query 29848 CATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACAC 29907 | ||||||||| |||| | | | |||| | ||||| || ||||| ||||||| Sbjct 459840979 GAGAGCATGGCACAGAGGCAAGCCGGCGAGAGGAAGATCTTTCGGATTCCAAGCACACAT 459840920 Query 29908 GATGATGCGCCTGTCTTCTGGGTTG 29932 | ||| | ||||| || |||||| Sbjct 459840919 AACGATCCTTCTGTCATCAGGGTTG 459840895 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/203 (69%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||| ||||||||||| || | || ||| ||| ||| ||||| |||| |||| Sbjct 459840858 AAATGTCTCCACTGGAAACCACAGACTGGTTCCAAATCT---TCTTCGTTGTGAGGGAAG 459840802 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 | | |||||||||||||| | || | || || ||||| ||| || || || Sbjct 459840801 CTCAGGTTGTCCAAAAAGTCACGCGACTCATTAGCACTCCAGAACTTCAC-----TCGCG 459840747 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 ||||| || || |||||| | || || | |||||||| || ||||||| ||| || Sbjct 459840746 GAGAGTTCCTTATCATTTGTGCAGCCCCTAATAAACCACAGGAGTTCCTCCAGGACTCCC 459840687 Query 30197 TTCCAAAAGACCCTCTTGGTCGT 30219 ||| | || || | |||||| || Sbjct 459840686 TTCAAGAACACACACTTGGTTGT 459840664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406138370228176