Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25]
5,016 sequences; 3,598,443,077 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq6 434 9e-117
seq2 419 2e-112
seq1 122 7e-23
seq8 105 6e-18
seq3 104 2e-17
>seq6
Length=292091736
Score = 434 bits (480), Expect = 9e-117
Identities = 628/877 (72%), Gaps = 17/877 (2%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| ||||| ||||| ||| |||||||| |||||||| ||||| || || |||| ||
Sbjct 153786738 TGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATAT---CC 153786682
Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAAT 4379
||||||||||| |||| ||| | || || | | ||| | | | | |
Sbjct 153786681 ATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAAGCTAGTTCCAACATAAGT 153786622
Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439
| ||| ||||||||||| ||||| || |||| | ||| || |||||||| || |
Sbjct 153786621 CTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATTCCAATCAACTTT 153786562
Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499
||||| | || | ||||||||||| |||||||| | || || | ||| || |||
Sbjct 153786561 ACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACAGCATTGACGATCATTTCT 153786502
Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCA 4559
|| | ||| || | || || || | ||| | || | |||| ||| || |||||||||
Sbjct 153786501 TTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAACATTAAGCAGGCAAAATCA 153786442
Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619
||||| ||||| || ||||||||||| | ||| || ||||| |||||||| |||||||||
Sbjct 153786441 CAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTAATCCAGGCATTAAA 153786382
Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679
|||| || || |||| ||||| | ||||| || ||||||||||| || ||||| ||
Sbjct 153786381 CCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACT 153786322
Query 4680 GCGGCAAACGCTACTAATCG-GGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAA 4738
|| ||||| ||| | | || ||| | ||| ||||||| |||||| | ||
Sbjct 153786321 GCTGCAAAAGCTGCAACACGTTCACCATATGTTGCT-TCTTTGTCCCCAATCCA--TCAA 153786265
Query 4739 TGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTT 4795
||||||| |||||| || ||||| || || | ||| | || || || || ||||
Sbjct 153786264 GGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAGAGAAATTC 153786205
Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855
|||| || | ||||| | ||||| ||||| || || || |||||||||||||||||
Sbjct 153786204 CCTTTCTTTA---GGGTCCTTAATAT--GTGTCAATAAGAAGACTATACATTTCAGAATG 153786150
Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
| ||||| | || ||||| || || || || ||||| | ||||||||||| || |||||
Sbjct 153786149 TCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTC 153786090
Query 4916 GTTACAAAATC-TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974
| | ||| | ||| || || ||||| |||||||| || ||||| |||||||| |||
Sbjct 153786089 TTGGCTAAACCGCTTCAACCAA-TTTTCATTTACTATGCCATCACTTGCTGCAAAGAACC 153786031
Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034
| || || |||||||| ||||||| ||||||| ||| | ||| |||||| | | ||
Sbjct 153786030 CTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTTCCCAGTGCTGAATAT 153785971
Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094
| |||| | ||| || || ||| | ||||| || || || || ||||| || |||||
Sbjct 153785970 CCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCTTTCTTATACATGT 153785911
Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131
||||| ||| | |||| ||| || | ||||||||
Sbjct 153785910 GTCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 153785874
>seq2
Length=541556283
Score = 419 bits (464), Expect = 2e-112
Identities = 628/880 (71%), Gaps = 14/880 (2%)
Strand=Plus/Minus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| ||||| ||||| || |||||||| |||||||| ||||| || || ||||| |||
Sbjct 435771100 TGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATATTCTCC 435771041
Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTAGAGCTACAAGCAA 4378
||||||||||| ||||| ||| | || | || | | || | || | | | |
Sbjct 435771040 ATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAACCT-AGTTCCAACATAAG 435770982
Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438
|| ||| ||||||||||| || || || |||| | ||| || |||||||| ||| |
Sbjct 435770981 TCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCATTCCAATCAATTT 435770922
Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGT-GATTATAT 4497
| | | | | | ||||| ||||| |||||||| | || || ||| ||| || |
Sbjct 435770921 TATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACAGCA-CTGACGATAATTT 435770863
Query 4498 CTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA- 4556
|||| | ||| || | || || || | || | || | |||| ||| || ||||||
Sbjct 435770862 CTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAACATTAAGCAGGCAAAAA 435770803
Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616
|||||||| ||| | || ||||||||||| ||||| || ||||| |||||||| ||||||
Sbjct 435770802 TCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATT 435770743
Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676
||||||| || || ||||| ||||| | ||||| || ||||||||||| || |||||
Sbjct 435770742 AAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCA 435770683
Query 4677 ACGGCGGCAAACGCTACTA-ATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTT 4735
|| || ||||| ||||| | || ||| | ||| ||||||| |||||||
Sbjct 435770682 ACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCT-TCTTTGTCCCCAATCCATCA 435770624
Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAA 4792
||| ||||||| |||||| || ||||| || || | ||| | || || || || ||
Sbjct 435770623 TAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAGAGAAA 435770564
Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852
|| |||| || | ||||| | |||||||||||| || || || |||||||||||||
Sbjct 435770563 TTCCCTTTCTTTA---GGGTCCTTAATATAAGTGTCAATAAGAAGATTATACATTTCAGA 435770507
Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATC-TAGCTTCTGTTACTTGAA 4911
|||||| | || || |||| || || || || ||||| | ||||||||||| | |
Sbjct 435770506 ATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGCTTCTGTTACCTATA 435770447
Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971
|||| | | ||| | || || || ||||| |||| ||| || ||||| |||||||| |
Sbjct 435770446 CTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGA 435770387
Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031
| || || ||||||||||| ||||||| || |||| ||| | || |||||| |||
Sbjct 435770386 AAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGCTTCCCAGTGCTGCA 435770327
Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091
||| |||| | ||| || || ||| | ||||| || || || | | ||| || ||||
Sbjct 435770326 TATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTATGATTTCTTATACA 435770267
Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131
| |||||| ||| | |||| ||| || | ||||||||
Sbjct 435770266 TGTGCCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 435770227
Score = 82.4 bits (90), Expect = 7e-11
Identities = 139/197 (71%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 31789 AATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAA 31848
||||||| | ||| | | || || || | | | ||||| ||||| ||||| | |
Sbjct 124308654 AATTTCTCTTCCTCCTGACTGATATGGTCAAGTTGCTCCACATTCTGGCTTGGCTGCAAG 124308713
Query 31849 ACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAAC-GTTGGAA 31907
|||||| || || || || || ||||| |||||| ||| || |||||||| |||||
Sbjct 124308714 ACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTACAGAGGAAAATGTTGGTG 124308773
Query 31908 TTGTGTTGTTTAATTTTGG--AGAAAAATCATACAGTATAAAAAAGGGCGATAGGGTAGC 31965
||||| | ||||||||||| || ||| | || |||||||||| || || | ||
Sbjct 124308774 TTGTGCTATTTAATTTTGGCAAGGAAACCTTTGAAG--TAAAAAAGGGTGACTGGATTGC 124308831
Query 31966 TCAACTAATTTGCGAAA 31982
|| || ||||| ||||
Sbjct 124308832 ACAGCTGATTTG-GAAA 124308847
>seq1
Length=748055161
Score = 122 bits (134), Expect = 7e-23
Identities = 100/122 (82%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || ||||| |||||||| ||||||||||||| || ||
Sbjct 529237635 TCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 529237694
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| |||
Sbjct 529237695 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCT 529237754
Query 4692 AC 4693
||
Sbjct 529237755 AC 529237756
Score = 107 bits (118), Expect = 2e-18
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
||||| | |||||||||||| || || || |||||||||||||||||||| ||||| ||
Sbjct 529239616 GGGTCCTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATT 529239675
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
||||| || || || || ||||| | ||||||||||| || |||||
Sbjct 529239676 GCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTC 529239722
>seq8
Length=312544902
Score = 105 bits (116), Expect = 6e-18
Identities = 215/318 (68%), Gaps = 5/318 (2%)
Strand=Plus/Plus
Query 31667 CTATCTGAACATGCTACGGTTCCTACAAAAGGATCAGA---GGGTTCTGCGGGATATGAT 31723
|| ||||| ||||| || || ||| | || | || | ||| |||| || |||||
Sbjct 120114476 CTCTCTGAGCATGCCACTGTCCCTTCTAAGGAGTCGGCCCTGGG--CTGCTGGCTATGAC 120114533
Query 31724 TTATATAGCGCCTACGACTATGTGGTAGAGGCAAAATCTAGAGCGCTAGTTAAAACCGAT 31783
|| || || ||||| || ||| || || | | ||| || || ||||| |||
Sbjct 120114534 TTGTACAGTGCCTATGATTATACAATACCAGCCATGGAGAAAGCCCTTGTGAAAACTGAT 120114593
Query 31784 ATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCA 31843
||||| ||| || | ||| | || || || || ||| | ||||| |||| |||||
Sbjct 120114594 ATTCAGATTCCTCTTCCTCCTGGCTGTTATGGTCGAGTTGCTCCACATTCTGCCTTGGCT 120114653
Query 31844 GTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTT 31903
|||||||| || || || || || ||||| |||||| ||| || ||||||| |||
Sbjct 120114654 ACAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTACGGAGGAAATGTT 120114713
Query 31904 GGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTATAAAAAAGGGCGATAGGGTA 31963
|| | ||| | ||||||||||| || || | | |||||||||| || || |
Sbjct 120114714 GGTGTAGTGCTATTTAATTTTGGCAAAGAAACCTTTGAAGTAAAAAAGGGTGACCGGATT 120114773
Query 31964 GCTCAACTAATTTGCGAA 31981
|| || || ||||| |||
Sbjct 120114774 GCACAGCTGATTTGTGAA 120114791
>seq3
Length=527952102
Score = 104 bits (114), Expect = 2e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
||||||| || || ||||| || || || || | ||| ||||| | |||||||||||||
Sbjct 368168863 TCGTCTCGACTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTTTTA 368168922
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| |||||||| ||||| || || || ||||| || ||||| || || ||||| ||
Sbjct 368168923 AGCCAGAATATAGCAGCAAAAGAACCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAGCA 368168982
Query 4692 AC 4693
||
Sbjct 368168983 AC 368168984
Score = 95.1 bits (104), Expect = 1e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990
||| | |||||| || ||||| || ||||||||||||||||| ||||| | |||||| ||
Sbjct 368175359 TACCAGGTTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATATGAGAGAT 368175418
Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050
|| |||| || || | || ||||| ||||| || || | ||| || | |||||||||
Sbjct 368175419 GAAATACTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCCTTTGATAAATCAAC 368175478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427023493390328
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