Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq6 434 9e-117 seq2 419 2e-112 seq1 122 7e-23 seq8 105 6e-18 seq3 104 2e-17 >seq6 Length=292091736 Score = 434 bits (480), Expect = 9e-117 Identities = 628/877 (72%), Gaps = 17/877 (2%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || ||||| ||||| ||| |||||||| |||||||| ||||| || || |||| || Sbjct 153786738 TGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATAT---CC 153786682 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAAT 4379 ||||||||||| |||| ||| | || || | | ||| | | | | | Sbjct 153786681 ATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAAAGCTAGTTCCAACATAAGT 153786622 Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 | ||| ||||||||||| ||||| || |||| | ||| || |||||||| || | Sbjct 153786621 CTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCAATTCATTCCAATCAACTTT 153786562 Query 4440 ACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCT 4499 ||||| | || | ||||||||||| |||||||| | || || | ||| || ||| Sbjct 153786561 ACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAACAGCATTGACGATCATTTCT 153786502 Query 4500 TTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 || | ||| || | || || || | ||| | || | |||| ||| || ||||||||| Sbjct 153786501 TTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTTGAACATTAAGCAGGCAAAATCA 153786442 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 ||||| ||||| || ||||||||||| | ||| || ||||| |||||||| ||||||||| Sbjct 153786441 CAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGAAAAAGTTAATCCAGGCATTAAA 153786382 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 |||| || || |||| ||||| | ||||| || ||||||||||| || ||||| || Sbjct 153786381 CCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACT 153786322 Query 4680 GCGGCAAACGCTACTAATCG-GGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAA 4738 || ||||| ||| | | || ||| | ||| ||||||| |||||| | || Sbjct 153786321 GCTGCAAAAGCTGCAACACGTTCACCATATGTTGCT-TCTTTGTCCCCAATCCA--TCAA 153786265 Query 4739 TGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTT 4795 ||||||| |||||| || ||||| || || | ||| | || || || || |||| Sbjct 153786264 GGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAGAGAAATTC 153786205 Query 4796 ACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATG 4855 |||| || | ||||| | ||||| ||||| || || || ||||||||||||||||| Sbjct 153786204 CCTTTCTTTA---GGGTCCTTAATAT--GTGTCAATAAGAAGACTATACATTTCAGAATG 153786150 Query 4856 TATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 | ||||| | || ||||| || || || || ||||| | ||||||||||| || ||||| Sbjct 153786149 TCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTC 153786090 Query 4916 GTTACAAAATC-TTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | ||| | ||| || || ||||| |||||||| || ||||| |||||||| ||| Sbjct 153786089 TTGGCTAAACCGCTTCAACCAA-TTTTCATTTACTATGCCATCACTTGCTGCAAAGAACC 153786031 Query 4975 CCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAAT 5034 | || || |||||||| ||||||| ||||||| ||| | ||| |||||| | | || Sbjct 153786030 CTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGTTTCCCAGTGCTGAATAT 153785971 Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 | |||| | ||| || || ||| | ||||| || || || || ||||| || ||||| Sbjct 153785970 CCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCTTTCTTATACATGT 153785911 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||||| ||| | |||| ||| || | |||||||| Sbjct 153785910 GTCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 153785874 >seq2 Length=541556283 Score = 419 bits (464), Expect = 2e-112 Identities = 628/880 (71%), Gaps = 14/880 (2%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || ||||| ||||| || |||||||| |||||||| ||||| || || ||||| ||| Sbjct 435771100 TGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTCCAAAGAGATATTCTCC 435771041 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTAGAGCTACAAGCAA 4378 ||||||||||| ||||| ||| | || | || | | || | || | | | | Sbjct 435771040 ATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAAACCT-AGTTCCAACATAAG 435770982 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| ||||||||||| || || || |||| | ||| || |||||||| ||| | Sbjct 435770981 TCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAATTCATTCCAATCAATTT 435770922 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGT-GATTATAT 4497 | | | | | | ||||| ||||| |||||||| | || || ||| ||| || | Sbjct 435770921 TATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACAGCA-CTGACGATAATTT 435770863 Query 4498 CTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAA- 4556 |||| | ||| || | || || || | || | || | |||| ||| || |||||| Sbjct 435770862 CTTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGTTTGAACATTAAGCAGGCAAAAA 435770803 Query 4557 TCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATT 4616 |||||||| ||| | || ||||||||||| ||||| || ||||| |||||||| |||||| Sbjct 435770802 TCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATT 435770743 Query 4617 AAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCT 4676 ||||||| || || ||||| ||||| | ||||| || ||||||||||| || ||||| Sbjct 435770742 AAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCA 435770683 Query 4677 ACGGCGGCAAACGCTACTA-ATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTT 4735 || || ||||| ||||| | || ||| | ||| ||||||| ||||||| Sbjct 435770682 ACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCT-TCTTTGTCCCCAATCCATCA 435770624 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAA 4792 ||| ||||||| |||||| || ||||| || || | ||| | || || || || || Sbjct 435770623 TAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGGCATTGAAGAGAAA 435770564 Query 4793 TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 || |||| || | ||||| | |||||||||||| || || || ||||||||||||| Sbjct 435770563 TTCCCTTTCTTTA---GGGTCCTTAATATAAGTGTCAATAAGAAGATTATACATTTCAGA 435770507 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATC-TAGCTTCTGTTACTTGAA 4911 |||||| | || || |||| || || || || ||||| | ||||||||||| | | Sbjct 435770506 ATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGGGCTTCTGTTACCTATA 435770447 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 |||| | | ||| | || || || ||||| |||| ||| || ||||| |||||||| | Sbjct 435770446 CTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGA 435770387 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 | || || ||||||||||| ||||||| || |||| ||| | || |||||| ||| Sbjct 435770386 AAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAAGCTTCCCAGTGCTGCA 435770327 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 ||| |||| | ||| || || ||| | ||||| || || || | | ||| || |||| Sbjct 435770326 TATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTATGATTTCTTATACA 435770267 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 | |||||| ||| | |||| ||| || | |||||||| Sbjct 435770266 TGTGCCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 435770227 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 31789 AATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCAGTTAA 31848 ||||||| | ||| | | || || || | | | ||||| ||||| ||||| | | Sbjct 124308654 AATTTCTCTTCCTCCTGACTGATATGGTCAAGTTGCTCCACATTCTGGCTTGGCTGCAAG 124308713 Query 31849 ACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAAC-GTTGGAA 31907 |||||| || || || || || ||||| |||||| ||| || |||||||| ||||| Sbjct 124308714 ACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTACAGAGGAAAATGTTGGTG 124308773 Query 31908 TTGTGTTGTTTAATTTTGG--AGAAAAATCATACAGTATAAAAAAGGGCGATAGGGTAGC 31965 ||||| | ||||||||||| || ||| | || |||||||||| || || | || Sbjct 124308774 TTGTGCTATTTAATTTTGGCAAGGAAACCTTTGAAG--TAAAAAAGGGTGACTGGATTGC 124308831 Query 31966 TCAACTAATTTGCGAAA 31982 || || ||||| |||| Sbjct 124308832 ACAGCTGATTTG-GAAA 124308847 >seq1 Length=748055161 Score = 122 bits (134), Expect = 7e-23 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| |||||||| ||||||||||||| || || Sbjct 529237635 TCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 529237694 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 529237695 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCT 529237754 Query 4692 AC 4693 || Sbjct 529237755 AC 529237756 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 ||||| | |||||||||||| || || || |||||||||||||||||||| ||||| || Sbjct 529239616 GGGTCCTTAATATAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATT 529239675 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || ||||| | ||||||||||| || ||||| Sbjct 529239676 GCAATTTGGAAGCCATAGAAGCAGCGGGCTTCTGTTACCTGTACTTC 529239722 >seq8 Length=312544902 Score = 105 bits (116), Expect = 6e-18 Identities = 215/318 (68%), Gaps = 5/318 (2%) Strand=Plus/Plus Query 31667 CTATCTGAACATGCTACGGTTCCTACAAAAGGATCAGA---GGGTTCTGCGGGATATGAT 31723 || ||||| ||||| || || ||| | || | || | ||| |||| || ||||| Sbjct 120114476 CTCTCTGAGCATGCCACTGTCCCTTCTAAGGAGTCGGCCCTGGG--CTGCTGGCTATGAC 120114533 Query 31724 TTATATAGCGCCTACGACTATGTGGTAGAGGCAAAATCTAGAGCGCTAGTTAAAACCGAT 31783 || || || ||||| || ||| || || | | ||| || || ||||| ||| Sbjct 120114534 TTGTACAGTGCCTATGATTATACAATACCAGCCATGGAGAAAGCCCTTGTGAAAACTGAT 120114593 Query 31784 ATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTGGATTGGCA 31843 ||||| ||| || | ||| | || || || || ||| | ||||| |||| ||||| Sbjct 120114594 ATTCAGATTCCTCTTCCTCCTGGCTGTTATGGTCGAGTTGCTCCACATTCTGCCTTGGCT 120114653 Query 31844 GTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAGGAAACGTT 31903 |||||||| || || || || || ||||| |||||| ||| || ||||||| ||| Sbjct 120114654 ACAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTACGGAGGAAATGTT 120114713 Query 31904 GGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTATAAAAAAGGGCGATAGGGTA 31963 || | ||| | ||||||||||| || || | | |||||||||| || || | Sbjct 120114714 GGTGTAGTGCTATTTAATTTTGGCAAAGAAACCTTTGAAGTAAAAAAGGGTGACCGGATT 120114773 Query 31964 GCTCAACTAATTTGCGAA 31981 || || || ||||| ||| Sbjct 120114774 GCACAGCTGATTTGTGAA 120114791 >seq3 Length=527952102 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||| || || ||||| || || || || | ||| ||||| | ||||||||||||| Sbjct 368168863 TCGTCTCGACTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTTTTA 368168922 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| |||||||| ||||| || || || ||||| || ||||| || || ||||| || Sbjct 368168923 AGCCAGAATATAGCAGCAAAAGAACCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAGCA 368168982 Query 4692 AC 4693 || Sbjct 368168983 AC 368168984 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| | |||||| || ||||| || ||||||||||||||||| ||||| | |||||| || Sbjct 368175359 TACCAGGTTTTCATTGACTATTCCATCACTGGCTGCAAAAAAAGCCAAGATATGAGAGAT 368175418 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | || ||||| ||||| || || | ||| || | ||||||||| Sbjct 368175419 GAAATACTTCTCATCTGATTTCAGTTTGTTCCAATGAGGAAGATCCTTTGATAAATCAAC 368175478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427023493390328