Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5 325 3e-84 seq3 224 7e-54 seq2 104 2e-17 >seq5 Length=304825324 Score = 325 bits (360), Expect = 3e-84 Identities = 446/622 (72%), Gaps = 2/622 (0%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||| || || || || | || |||||| | || || || || | |||| | | Sbjct 43288157 TGGGAAAAGGCCTTGGTTCTCGCTGAAGCTGAATTTTTAGTGGCTCAATATGATTCTCAT 43288216 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | || ||||| |||||||| | ||| ||||| || || || | || || |||| ||||| Sbjct 43288217 ATACATGAGCATCTCCCAGAGAGTGTACAAAATCACCTGGCTTCAGGCCTGTGATGTGAG 43288276 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | |||||||| ||||| || ||||| ||||| ||| | || || ||||| || ||||| | Sbjct 43288277 CAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGGTGAACGGCACCCCAAGGCCCATAT 43288336 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | || || | ||| || |||||||| || | ||| |||| |||||| |||||||| | Sbjct 43288337 CTCCGGATCGCTGCTATAGCTGACAGGAAAACTCACCATTTGCTACGTAGAACTGACAGA 43288396 Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403 ||||||||| |||| | |||||||| | ||||| || |||| || |||| | Sbjct 43288397 GAGCGTGGCACAGAGGCAAGGCCATGAGAGGAAGATCTTTTGGACTCCAAGCACACATAA 43288456 Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463 |||| | ||||| || |||||| | |||| ||| | | | ||||| ||| || ||| Sbjct 43288457 TGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCGATGACTTTTTGTAGCAGACCCA 43288516 Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523 | || ||| || || ||| |||| || |||| ||||| || ||||| ||||| | Sbjct 43288517 CTCCTTGCCCAGAATAATCTGTGTTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACT 43288576 Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 27583 |||| | |||| ||||||| |||| ||||| ||| | ||||||| ||||||| Sbjct 43288577 GGAAGGCACACACTGGTCCCAAACCTCCTTCTTCTCTGAGT--GAAGCCCAGATTGTCCA 43288634 Query 27584 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 27643 ||| || | || || ||||| ||||||||| | | |||||| |||||||||| || Sbjct 43288635 AAAGTTCACGTGACCCATTGGCATCCCAGATCGTCATCCCCTTGGCGGAGAGCTCCTTAC 43288694 Query 27644 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 27703 |||||| | || || | ||||||||||| ||||||| ||| ||| ||| || || | Sbjct 43288695 CATTTGTGCAACCCCTAATAAACCACAGCAGTTCCTCCAGGACACCCTACCAGAACACAC 43288754 Query 27704 TCTTGGTCGTGAGGAGGGGAAA 27725 ||| || || || | ||||| Sbjct 43288755 GCTTAGTTGTCAGCAAAGGAAA 43288776 >seq3 Length=527952102 Score = 224 bits (248), Expect = 7e-54 Identities = 355/505 (70%), Gaps = 4/505 (1%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| || ||||| |||| | |||||| | || || | || | |||| || | Sbjct 37328957 TGGGGAAAGGTCTTTGCTCTCATGGAAGCTGAATTTTTAGGGACTCAATATGATTCACAT 37329016 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | || ||||| |||||||| | | ||||| || || || | || || ||| ||||| Sbjct 37329017 ATACATGAGCATCTCCCAGAGAAGGTACAAAGTCACCTGGCTTCAGGCCCGTGGTGTGAG 37329076 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 |||||||| ||||| || |||| ||||| ||| | || || ||||||| ||||| | Sbjct 37329077 TGATCATGTAGGTGAGCAGGAAGTAACTGGCAATGCTGAACGGCACCCCGATGCCCATAT 37329136 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | || || |||||| || ||||| || |||||||| | |||||| ||| |||| | Sbjct 37329137 CTCCAGATTGCTGGTATAGTTGACAGGAAAGCTCTCCGTTCACTACGTAGAACGGACAGA 37329196 Query 27344 TGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 27403 || ||||| ||||| | |||||||| | ||||| || ||| | ||||||| | Sbjct 37329197 GAGC-TGGCATGGAGGCAAGGCCATGAGAGGAAGATCTTTTGGATTCTAAGCGCACATAA 37329255 Query 27404 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 27463 |||| | ||||| || |||||| | |||| ||| | | |||| |||||||||| Sbjct 37329256 TGATCCTTCTGTCATCAGGGTTGGTTTTGATTTTGTCAGTGAC--TTTGTAGCTGATCCA 37329313 Query 27464 CCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATT 27523 | || ||| || || ||| |||| || |||| ||||| || ||||| ||||| | Sbjct 37329314 CTCCTTGCCCAGAATAATCTGTGTTCATCTCTCTGTATTCTGCCCCAAAATGTCTCCACT 37329373 Query 27524 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 27583 |||| || ||| || |||||| ||||| ||||| ||||| ||||||| ||||||| Sbjct 37329374 GGAAGCCATAC-CCTGTCCCAAATCTCCTTCTTCTCTGTGAGTGAAGCCCAAGTTGTCCA 37329432 Query 27584 AAAAGTCTCTGGAACCGTTGGCGTC 27608 |||| || | | || ||||| || Sbjct 37329433 AAAACTCACACAACCCATTGGCATC 37329457 Score = 196 bits (216), Expect = 4e-45 Identities = 465/700 (66%), Gaps = 22/700 (3%) Strand=Plus/Plus Query 26988 TGAGCATCAGACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGA 27047 || || ||| |||||||| |||| | |||| ||||||| ||| || |||| Sbjct 405698301 TGGGCTTCACACTGCCATATCCATCTTAATGGTCCAGTGAGGGTTGTAGCCTTCCATCAG 405698360 Query 27048 GAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGG 27107 ||| ||||| ||||| ||||| || | | | ||| ||| | || | | |||| Sbjct 405698361 GAAGTCCTCAGCCTTGAAGTCATC-ATTTTTTACACTTTCCAGAGAATTTTGAACTTGGG 405698419 Query 27108 AAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGAC 27167 || ||| | || || || |||||| | | | || || | |||| || || || Sbjct 405698420 GAAAGGTTTTGGTTCTTGCTGAAGCTGAATTGTTATTGGCTCAATATGATTCACATATAC 405698479 Query 27168 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 27227 ||| | |||||||| | ||| |||| || | | || || |||| ||||| | Sbjct 405698480 ATGAACATCTCCCAGAGAGTGTGCAAAATCACTTAACTTCAGGCCTGTGATGTGAGAGAA 405698539 Query 27228 CAT-GTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCC 27286 || ||| ||||| || ||||| |||| |||||| || | ||||| || ||||| || | Sbjct 405698540 TATTGTAGGTGAGCAGGGAGTAACTGGTGATGTTGAACAGCACCCCAAGACCCATATCTC 405698599 Query 27287 CCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGG 27346 | || | |||||| ||||| || || ||||| ||| ||| || |||||||| | | Sbjct 405698600 CAGATCACTGGTATAGCTGCCAGGAAAGCTCATCATTCACTACATAGAACTGACAGAGAG 405698659 Query 27347 CGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 27406 | ||| | || || | |||||||| ||||| | ||||| ||||| |||| Sbjct 405698660 CATGGTATGGTGGCAAAGCCATGA--------TCTTTTGAATTCCAAATGCACATAATGA 405698711 Query 27407 --------TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 27458 | | ||||| || ||||| | |||| ||| | | | ||||| ||||| Sbjct 405698712 CAAAATGATCCTTCTGTCATCAAGGTTGGTTTTGATTTTGTCAATGACTTTTTGAAGCTG 405698771 Query 27459 ATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 27518 |||||| || || || || ||| | || || || | ||||| || ||||| || Sbjct 405698772 ATCCACTCCTTGTCCAGAATAATCTGTGTTAATCTCTTTGAATTCTGCCCCAAAATGTCT 405698831 Query 27519 CCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 27578 ||| ||||| | ||||| |||| || ||| ||||| ||||| ||||||| || Sbjct 405698832 CCACTGGAAGTCATACACTGGTCTCAAATCT---TCTTCTCTGTGAGTGAAGCCCAGGTT 405698888 Query 27579 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 27638 |||||||| | || || ||||| ||||||||||| ||||| || | |||||||| Sbjct 405698889 -TCCAAAAATTAATGTGACCCATTGGCATCCCAGATCTTCACCCCTTTGGCAGAGAGCTC 405698947 Query 27639 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 27678 || |||||| | || || | |||| |||||| ||| Sbjct 405698948 CTTACCATTTGTGCAACCCCTAATAAACCCCAGCAGTTCC 405698987 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| |||||| |||||||| ||||| || ||||| ||||| ||||| || || Sbjct 265126890 AGGCCTGTGATGTGAGCAATCATGTAGGTGAGCAGGGAGTAACTGGCAATGTTGAACGGC 265126831 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 |||||||| ||||| || || || | |||||| |||||||| || ||||| |||| | Sbjct 265126830 ACCCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAGGAAAGCTCACCATTTGCT 265126771 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| |||||||| | |||||||||||||| | |||||||| Sbjct 265126770 ACGTAGAACTGACAGAGAGCGTGGCACGGAGGCAAGGCCATGAG 265126727 Score = 120 bits (132), Expect = 2e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || |||| ||||| || ||||| ||||| ||||| || ||||| ||||||| | Sbjct 265123302 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAAT 265123243 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||| ||||| || || || |||| ||||||||||| || | || || ||||| | Sbjct 265123242 CTCCTTCTTCTCTCTGAGTGAGGCCCAGGTTGTCCAAAAATTCACGTGACCCATTGGCAT 265123183 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 27641 |||||||||| |||||||| | |||||||| || Sbjct 265123182 CCCAGATCTTCACCCCCTTGGCAGAGAGCTCCTT 265123149 >seq2 Length=541556283 Score = 104 bits (114), Expect = 2e-17 Identities = 355/555 (64%), Gaps = 70/555 (13%) Strand=Plus/Minus Query 27162 GTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTG 27221 ||| || ||||| |||||||| ||| | ||||| || || || | || || |||| ||| Sbjct 459841151 GTATACATGAGCATCTCCCAGAGTGGGTACAAAATCACCTGGCTTCAGGCCTGTGATGTG 459841092 Query 27222 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 27281 || ||| | | ||||| || | ||| |||| |||||| || | | ||||| ||||| Sbjct 459841091 AGTGATCTT--AGGTGAGCAGGGTGTAACTGGTGATGTTGAACAGCATTCCGAGGCCCAT 459841034 Query 27282 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACA 27341 || || || |||||| |||||||| || ||||| ||| | || |||| ||| Sbjct 459841033 ATCTCCGGATTGCTGGTATAGCTGACAGGAAAGCTCATCAT---TCACT---AACTAACA 459840980 Query 27342 TATGGCGTGGCACGGAGG-AAGA-GCCATGAGGCCCAAG-TCTTTGGGGTTCCAGGCGCA 27398 | || |||||| |||| ||| | | |||| ||| ||||| || ||||| || || Sbjct 459840979 GAGAGCATGGCACAGAGGCAAGCCGGCGAGAGG---AAGATCTTTCGGATTCCAAGCACA 459840923 Query 27399 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 27458 || | ||| | ||||| || |||||| |||| Sbjct 459840922 CATAACGATCCTTCTGTCATCAGGGTTG--------------------GTTTA------- 459840890 Query 27459 ATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 27518 ||| || | |||| || |||| ||||| || ||||| || Sbjct 459840889 ----------ATCT-------GTGT----TCATCTCTTTGTATTCTGCCCCTAAATGTCT 459840851 Query 27519 CCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 27578 ||| ||||| || | || ||| ||| ||| ||||| |||| ||||| | || Sbjct 459840850 CCACTGGAAACCACAGACTGGTTCCAAATCT---TCTTCGTTGTGAGGGAAGCTCAGGTT 459840794 Query 27579 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 27638 |||||||||||| | || | || || ||||| ||| || || ||||||| || Sbjct 459840793 GTCCAAAAAGTCACGCGACTCATTAGCACTCCAGAACTTCAC-----TCGCGGAGAGTTC 459840739 Query 27639 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 27698 || |||||| | || || | |||||||| || ||||||| ||| ||||| | || Sbjct 459840738 CTTATCATTTGTGCAGCCCCTAATAAACCACAGGAGTTCCTCCAGGACTCCCTTCAAGAA 459840679 Query 27699 GACCCTCTTGGTCGT 27713 || | |||||| || Sbjct 459840678 CACACACTTGGTTGT 459840664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369484611101096