Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 421 9e-113 seq2 407 2e-108 seq4 105 1e-17 seq1 105 1e-17 >seq6 Length=292091736 Score = 421 bits (466), Expect = 9e-113 Identities = 637/897 (71%), Gaps = 22/897 (2%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| ||||||||| | || ||||| ||||| | |||||||| || |||||||| || Sbjct 153786757 TGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTCCC 153786698 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 |||||| || |||| ||||||||||||| |||| | || |||| || |||| Sbjct 153786697 TTCCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGCTCTAAAAATCTTGCTAAA 153786641 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA-- 46500 ||| ||| | || ||||| ||||| || ||||| ||||| || | ||||| | Sbjct 153786640 AGCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATA---TTGCTTCATTAAAGT 153786584 Query 46501 -CAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGT 46559 ||||||||||| || | || || || | ||| || || | |||||| ||||| || | Sbjct 153786583 GCAATTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCT 153786524 Query 46560 GACAGCATC--CGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGT 46617 ||||||| |||| | || | | ||| ||||||| || || | || ||| Sbjct 153786523 AACAGCATTGACGATCATTTC--TTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGT 153786466 Query 46618 TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTA 46677 || |||||||| || |||||||||||||| | || |||||||| ||||| ||||| || Sbjct 153786465 TTGAACATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTT 153786406 Query 46678 GAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT 46737 ||||| || | |||||||||| || || || ||| |||| ||||| | || ||||| Sbjct 153786405 GAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAA 153786346 Query 46738 CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCA 46797 ||||||||||| || ||||| || || || || || ||| | || || || | || Sbjct 153786345 CCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCT 153786286 Query 46798 TCATTATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTT 46854 || || | |||||| | | |||| ||||| || || || |||||||| | |||| Sbjct 153786285 TCTTTGTCCCCAATCCATCAAGG--CCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTT 153786228 Query 46855 TCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAA 46914 || || ||||| |||||||| | |||| | | || |||| ||||| || || | | Sbjct 153786227 TCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAA--TATGTGTCAATAAGA 153786170 Query 46915 AGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTT 46974 |||||||||||||| ||||| | ||| | || || || || || || || || || | Sbjct 153786169 AGACTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGG 153786110 Query 46975 GCTTCAGTAATCTGTACCTCTGTACAAAATCG-TTCAGACAAATTCTCATTCACTATTCC 47033 ||||| || | |||||| ||| | ||| || |||| || |||| ||||| ||||| || Sbjct 153786109 GCTTCTGTTACCTGTACTTCTTGGCTAAACCGCTTCA-ACCAATTTTCATTTACTATGCC 153786051 Query 47034 ATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAG 47093 |||||| || ||||| || | || || || || || || || || || | ||| Sbjct 153786050 ATCACTTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAA 153785991 Query 47094 TTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGC 47153 | | ||||| | ||||| || || | ||| || || |||||||||||||| || || Sbjct 153785990 AGTTTCCCAGTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGC 153785931 Query 47154 CTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 ||||||||| |||||||| | || || ||| | || | || || || || ||||| Sbjct 153785930 CTCTGCTTTCTTATACATGTGTCAAATGTCATGGTACTCAATGGGGAAGATGACAAA 153785874 >seq2 Length=541556283 Score = 407 bits (450), Expect = 2e-108 Identities = 640/910 (70%), Gaps = 15/910 (2%) Strand=Plus/Minus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| ||||||||| | || ||||| ||||| | |||||||| || |||||||| || Sbjct 435771119 TGACATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCC 435771060 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 |||||| || ||||| |||||||||||||| ||||| | || |||| || |||| Sbjct 435771059 TTCCAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGCTCTAAAAATCTTGCTAAA 435771000 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA-- 46500 |||| ||| | || ||||| ||||| || ||||| || || || | ||||| | Sbjct 435770999 ACCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTA---TTGCTTCATTAAAGT 435770943 Query 46501 -CAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGT 46559 ||||||||||| || | ||| | | | || || || | ||||| ||||| || | Sbjct 435770942 GCAATTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCT 435770883 Query 46560 GACAGCA--TCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGT 46617 |||||| ||||| | || | | ||| ||||||| || || | || ||| Sbjct 435770882 AACAGCACTGACGATAATTTC--TTTCACTTTTTCCTCTGAAGGCTTGTGAACCAGGTGT 435770825 Query 46618 TTAAACATTAAACATGC-AAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTT 46676 || |||||||| || || |||||||||||| | | |||||||| ||||| | ||| || Sbjct 435770824 TTGAACATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATT 435770765 Query 46677 AGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGA 46736 ||||| || | |||||||||| || || || |||||||| ||||| | || ||||| Sbjct 435770764 TGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGA 435770705 Query 46737 TCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGC 46796 ||||||||||| || ||||| || || || || || |||| || || || | || Sbjct 435770704 ACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGC 435770645 Query 46797 ATCATTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGT 46853 || || | |||||| | | ||||| ||||| || || || |||||||| | ||| Sbjct 435770644 TTCTTTGTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGT 435770585 Query 46854 TTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAA 46913 ||| || ||||| |||||||| | |||| | | || |||| ||| || || || | Sbjct 435770584 TTCAATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAG 435770525 Query 46914 AAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATC- 46972 |||| |||||||||| ||||| ||| | || || | || || || || || || || | Sbjct 435770524 AAGATTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCG 435770465 Query 46973 TTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTC 47032 ||||| || | || ||| ||| | ||| || || |||||| ||||| | ||| | Sbjct 435770464 GGGCTTCTGTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGC 435770405 Query 47033 CATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA 47092 ||||||| || ||||| || || || ||||| || || || || || || | ||| Sbjct 435770404 CATCACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCA 435770345 Query 47093 GTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACG 47152 | ||||| | ||||| || || | ||| || || |||||||||||||| || | Sbjct 435770344 AAGCTTCCCAGTGCTGCATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGG 435770285 Query 47153 CCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATC 47212 ||| || ||| |||||||| | ||| || ||| | || | || || || || ||||| | Sbjct 435770284 CCTATGATTTCTTATACATGTGCCAAATGTCATGGTACTCAATGGGGAAGATGACAAAGC 435770225 Query 47213 TATTTGGATT 47222 || ||||| Sbjct 435770224 GCTTGGGATT 435770215 >seq4 Length=435153693 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 75934 TCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTC 75993 ||| ||||| || || || | ||||||||| || | || | || || || | || Sbjct 349054318 TCCTTTGCTGACAGGAGAGCCTTCATATGTTTCATAGGGGCCATACTCTTTGGCCAACTC 349054259 Query 75994 GCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTG 76053 || || || || || || || |||||||| ||||| || |||| ||||| || || Sbjct 349054258 ACAGCTGGCTTCCAAGGCTCCATAATAAATAGTTTCAAAGATCTGTTTATTCAGTAACTG 349054199 Query 76054 CGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAAC 76113 || ||| |||| ||||||||||| | || ||||||||||| || || ||||| || Sbjct 349054198 GGCCTCAGGACTCTCAAAAGGATATCTCATCAGGATAAATGCATCAGCCAGACCCTGCAC 349054139 Query 76114 TCCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 |||||| ||||| || | ||| | ||||| || Sbjct 349054138 TCCAATTCCAATGGGGCGATGGCGTTTATTTGA 349054106 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| ||| | || || || ||||| || | Sbjct 349067364 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGCTCAGCAATATGGATGT 349067305 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||||| ||||| ||||| || ||||||||||| ||||| || | || || | Sbjct 349067304 TCAAAGACTGACTCTGATCAATGAATGCCCCTCTATCAGCTGCCATCTTGAGAACAGTTT 349067245 Query 75564 TTTGAGGAATTTCCCAAATAGTTTT 75588 | || | |||||||| | ||| || Sbjct 349067244 TCTGTGAGATTTCCCACACAGTCTT 349067220 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||||||||||| ||||||||| ||||| ||||| Sbjct 349049776 ATATAACTTCTCAAATTCTTCTCCCCAAACATCATCCAGACCAGGACACTCATTAGGACA 349049717 Query 76570 CATCAATGACCACTC 76584 ||||| ||||| || Sbjct 349049716 CATCAGGGACCAGTC 349049702 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| || || | ||| || || || || || || |||| || Sbjct 349039780 CTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGATG 349039721 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||| || || || | || || |||| || ||| |||| || || || || |||||| Sbjct 349039720 GCATAATCTGGGTGCTTGGTGGTCAAGGTTGCAGCTGTTTCAGCAGCCAAGGTGTCTAAT 349039661 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 77510 || | || || || || | |||| ||||| ||||||||||||| |||| Sbjct 349039660 TCCACTGTGGTCACCCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 349039609 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || ||||||||||| | || || || |||||||| |||||| | || || || || || Sbjct 349043612 GTGCCTGCATTAAAAAGGGTGGGGGAGGCATGAGTAAACCATCTCTCTGAGAGAAGGTTA 349043553 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||||||| | || || || || || ||||| || |||| || | ||| | | Sbjct 349043552 TAGGTTTCAATAGCAGCATCAATGTCATCTTTGTGAATCCCCACAGACACTCTCATTAGC 349043493 Query 77114 ATATGCTGAGGTCGTTC 77130 || |||||||||||||| Sbjct 349043492 ATGTGCTGAGGTCGTTC 349043476 >seq1 Length=748055161 Score = 105 bits (116), Expect = 1e-17 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| ||||||||| | || ||||| ||||| | |||||||| || |||||||| || Sbjct 529233555 TGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCGAAGAAGTTAGTTTTTCC 529233614 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 |||||| || ||||| |||||||||||||| ||||| Sbjct 529233615 TTCCAAAGAGATATTCTCCATAAAATCAAATGGATT 529233650 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||| || | |||||||||| || || || ||| Sbjct 529237635 TCATCTCTGCTAATAAGTTCATTTGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 529237694 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || ||||| || || || || || Sbjct 529237695 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCT 529237754 Query 46774 AC 46775 || Sbjct 529237755 AC 529237756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712889699013120