Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq3 87.8 7e-13 >seq3 Length=527952102 Score = 87.8 bits (96), Expect = 7e-13 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| ||| |||| ||||| | || | || ||||| ||||| | ||| ||||||| Sbjct 265126730 ATGGCCTTGCCTCCGTGCCACGCTCTCTGTCAGTTCTACGTAGCAAATGGTGAGCTTTCC 265126789 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 || || | || ||||| |||| || ||| | | || || ||||| ||||||||||| Sbjct 265126790 TGTCAGCTATACCAGCGATCTGGAGATATGGGCCTCGGGGTGCCGTTCAACATTGCCAGT 265126849 Query 52230 TATTCCTTGCTGACGCATCTGATTGCTC 52257 || ||| |||| || | ||||||||| Sbjct 265126850 TACTCCCTGCTCACCTACATGATTGCTC 265126877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190084676931760