Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 seq2 86.0 5e-12 >seq3 Length=527952102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || ||||| ||||| ||||| ||| ||||| ||| ||||| Sbjct 475400827 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 475400886 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || ||| || |||||||||||| | ||| || || Sbjct 475400887 GATACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAAGGCATCCCCCCAGACCAG 475400946 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || || || | ||| || || || |||||||| | || || | || || || Sbjct 475400947 CAGAGACTGATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 475401006 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || || || || | ||||| | ||||| Sbjct 475401007 ATCCAGAAAGAATCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 475401053 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || || || || ||||| ||||| ||||||||| | ||| |||||||| Sbjct 475400371 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 475400430 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||| || |||||||||||| | ||| || || Sbjct 475400431 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 475400490 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || || || | ||| || || || | |||||| | || || | || || || Sbjct 475400491 CAGAGACTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 475400550 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || |||||||| || || || ||||| | ||||| | ||||||| Sbjct 475400551 ATCCAGAAAGAATCAACTCTTCACTTAGTCCTTCGTCTCAGGGGTGGCA 475400599 >seq2 Length=541556283 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || ||||| ||||| ||||||||| | ||| |||||||| Sbjct 204602194 ATGCAGATATTTGTGAAGACCTTGACTGGCAAGACCATTACCCTTGAAGTAGAACCCAGT 204602135 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || || ||| || |||||||||||| | ||| || || Sbjct 204602134 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAG 204602075 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || || || | ||| || || || |||||||| | || || | || || || Sbjct 204602074 CAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 204602015 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCG 111314 || ||||||||||| || || || || || |||| Sbjct 204602014 ATCCAAAAAGAATCCACCCTGCACTTGGTCCTGCG 204601980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421785413626816