Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq6 268 1e-66 seq2 250 3e-61 >seq6 Length=292091736 Score = 268 bits (296), Expect = 1e-66 Identities = 587/869 (68%), Gaps = 19/869 (2%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 ||| || |||||| | |||||||| || || | |||| ||||| || || || || || | Sbjct 153786754 CATCACTCCCATTCTCTGATATTCTCCTACTC-TCTTCTCGAAGAAGTTAGTTTTCCCTT 153786696 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT--TACA 23321 | || || |||| |||||||||||||| |||| | | || | | ||| || | Sbjct 153786695 CCAAAGAGATAT---CCATAAAATCAAATAGATTTTCTGC--TCTAAAAATCTTGCTAAA 153786641 Query 23322 TGATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATA 23381 | || |||| | ||| || |||||||||||||| |||||||| ||| ||| | Sbjct 153786640 AGCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCGATATATTGCTTCATTAAAGTGCA 153786581 Query 23382 GTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAAC 23441 || || || || | ||||| || | || ||| || || | ||| || ||| Sbjct 153786580 ATTCATTCCAATCAACTTTACAGGCAAAGCTTCAGTCAAAAACTCCTGTTCTATTCTAAC 153786521 Query 23442 AGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAA---TACTT 23498 ||||| || |||| | | |||| ||| | || | | || | || Sbjct 153786520 AGCATTGACGATCATTT---CTTTCACTTTTTCCTCTGAAGGCTTGTGTACCAGGTGTTT 153786464 Query 23499 AAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGA 23558 |||| ||| || |||||||||||||||| || ||||| || ||||| |||||||| || Sbjct 153786463 GAACATTAAGCAGGCAAAATCACAATGTAAACCCTCATCTCTGCTAATAAATTCATTTGA 153786404 Query 23559 AAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCC 23618 ||| |||||||| |||||||| |||||||| || ||| ||||| | ||||| || || Sbjct 153786403 AAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGGGCCAGAATATGGATGCAAAAGAACC 153786344 Query 23619 GGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678 |||||||| || || ||||| || ||||| || ||| |||| |||| ||||||| | Sbjct 153786343 AGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTGCAACACGTTCACCATATGTTGCTTC 153786284 Query 23679 ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTC 23738 | || |||||| | | ||| | ||| ||| ||| ||||| | |||||| Sbjct 153786283 TTTGTCCCCAATCCA--TCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTTC 153786226 Query 23739 AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAA 23798 ||| || || |||||||| |||||| | || ||| |||||| ||||| || | Sbjct 153786225 AATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTC-CTTA-ATATGTGTCAATAAGAAG 153786168 Query 23799 ACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGC 23858 |||||||||||||||||| ||||| | || ||||| || || ||||| || || | || Sbjct 153786167 ACTATACATTTCAGAATGTCTATTTCCCATTGCAATTTGGAAGCCATAGAAGCAGCGGGC 153786108 Query 23859 TTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATC 23918 ||| | | || || || | ||| | || ||||||| || || || ||||| Sbjct 153786107 TTCTGTTACCTGTACTTCTTGGCTAAACCGCTTCAACCAATTTTCATTTACTATGCCATC 153786048 Query 23919 ACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTT 23978 ||| || |||||||| | | || | ||| || | | || |||| || | Sbjct 153786047 ACTTGCTGCAAAGAACCCTAACACGTGAGATATGAAGTACTTCTCGTCAGACTTCAAAGT 153785988 Query 23979 TTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAA 24038 || ||| | | |||||| || || | ||| || || ||| ||||||| || ||| Sbjct 153785987 TTCCCAGTGCTGAATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCCTC 153785928 Query 24039 GGCACGCTTATACATTAGCCAAATATCAT 24067 || ||||||||| | ||||| |||| Sbjct 153785927 TGCTTTCTTATACATGTGTCAAATGTCAT 153785899 >seq2 Length=541556283 Score = 250 bits (276), Expect = 3e-61 Identities = 582/871 (67%), Gaps = 14/871 (2%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||| || |||||| | |||||||| || || | | ||||| || || || || || || Sbjct 435771116 CATCACTCCCATTCTCTGATATTCTCCTACTCTGTTCTCGAAGAAGTTAGTTTTCCCTTC 435771057 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTT--TACAT 23322 || || ||||| |||||||||||||||||||| | | || | | ||| || | Sbjct 435771056 CAAAGAGATATTCTCCATAAAATCAAATGGATTTTCTGC--TCTAAAAATCTTGCTAAAA 435770999 Query 23323 GATAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAG 23382 || |||| | ||| || ||||||||||||||||| ||||| ||| ||| | Sbjct 435770998 CCTAGTTCCAACATAAGTCTGTCTGCTACAAATTCAATGTATTGCTTCATTAAAGTGCAA 435770939 Query 23383 TTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACA 23442 || || || || | ||||| | | | ||| ||||| | ||| || |||| Sbjct 435770938 TTCATTCCAATCAATTTTATATGCAAAGGTTCAGTCAAGAACTCCTGTTCTATTCTAACA 435770879 Query 23443 GCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATAC----TT 23498 ||| || |||| | | |||| ||| | || | | | || | || Sbjct 435770878 GCACTGACGATAATTT---CTTTCACTTTTTCCTCTGAAGGCT-TGTGAACCAGGTGTTT 435770823 Query 23499 AAACAATAAACATGCAAAA-TCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 |||| ||| || |||||| |||||||||| | ||||| || ||||| | |||||| | Sbjct 435770822 GAACATTAAGCAGGCAAAAATCACAATGTAAATCCTCATCTCTGCTAATAAGTTCATTTG 435770763 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 |||| |||||||| |||||||| |||||||| || | ||| ||||| | ||||| || | Sbjct 435770762 AAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAAC 435770703 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | |||||||| || || ||||| || ||||| || |||| | || |||| ||||||| | Sbjct 435770702 CAGAAAAGAAGATTCCTTCAACTGCTGCAAAAGCTACAACATGTTCACCATATGTTGCTT 435770643 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTT 23737 | || ||||||| | | ||| | ||| ||| ||| ||||| | ||||| Sbjct 435770642 CTTTGTCCCCAATCCATCATAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGTGTTT 435770583 Query 23738 CAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTA 23797 |||| || || |||||||| |||||| | || | ||||| || ||||| || | Sbjct 435770582 CAATGGCATTGAAGAGAAATTCCCTTTCTTTAGGGTCCTTAATATAAGTGTCAATAAGAA 435770523 Query 23798 AACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATC-TA 23856 | |||||||||||||||| || | || || |||| || || ||||| || || | Sbjct 435770522 GATTATACATTTCAGAATGTATGCTCTCCATTCCAATTTGGAAGCCATAGAAGCAGCGGG 435770463 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 ||||| | | | || || | ||| | | | |||||||| || | || ||| Sbjct 435770462 GCTTCTGTTACCTATACTTCTTGGCTAAACCGCTCCACCAAATTTTCATTTATTATGCCA 435770403 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAAT 23976 ||||| || ||||||||||| | |||| ||| || | | || |||| || Sbjct 435770402 TCACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTACTTCTCCTCAGACTTCAAA 435770343 Query 23977 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCC 24036 || ||| | | ||||| || || | ||| || || ||| ||||||| || ||| Sbjct 435770342 GCTTCCCAGTGCTGCATATCCTTAGAAAGATCCACCTCCTCAGCTGTCCAGAAGGAGGCC 435770283 Query 24037 AAGGCACGCTTATACATTAGCCAAATATCAT 24067 | | ||||||||| ||||||| |||| Sbjct 435770282 TATGATTTCTTATACATGTGCCAAATGTCAT 435770252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521455302702400