Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq2 143 4e-29 seq1 122 1e-22 >seq2 Length=541556283 Score = 143 bits (158), Expect = 4e-29 Identities = 214/304 (70%), Gaps = 0/304 (0%) Strand=Plus/Plus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| || | || ||||| ||||| || || | |||| || ||||| |||| Sbjct 82227231 GAACACTGAATGCAGTGAAGGGACATCCCTTCACATTATTGCAGATAAGTGACTGGATAG 82227290 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| || | || || || | ||| || || ||||| |||||||||||| Sbjct 82227291 AGGCTGTTTTGATAATTTCAAAACCTACATTTCCACCAAAAGTGCTAGGCTTCCAGTACT 82227350 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | ||||||||||| ||| ||||||| |||||||||||||| || || || | || | Sbjct 82227351 CAGGGGAGCAGATTGGGTTACCCATGAGTCCTTTGAGGGAGAAGGGCGCTCCAAGTTCTA 82227410 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 | | |||| || ||||||||| ||||| || |||||||||| | | | || | Sbjct 82227411 CCAGGGTCTCTCCAAAGATGGCGCCCGGACGAGGTTTTTCCACCAGAAGAGCAGGATATA 82227470 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 ||||| ||| |||| || || || | || || || ||||| || || || |||| Sbjct 82227471 ACTCCATAGCATCGATATCACCATAGACAGCTTCCAGCTCAGCAGCCATTTCTTTCTCTC 82227530 Query 8583 CTGT 8586 |||| Sbjct 82227531 CTGT 82227534 Score = 116 bits (128), Expect = 5e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 |||||||||||||| || ||||||||||| | ||||||| || ||| |||| Sbjct 82231167 CTTACCCCATGTCCTAGACCTTTAGTGAATTCTGGGCCTCTGTGATGGTCTGTCTTAAAG 82231226 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 |||||||| ||||||||||| | || || |||||||| | || ||||| |||||||| Sbjct 82231227 AACTGGTGAGTGAAATGTTGAGCGAAGAATGCAAACATCATATTTGTGCCTTGGGGATCA 82231286 Query 9770 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 ||| | || |||| | |||||| ||||||||||| Sbjct 82231287 GGAATAAACTTCCTTCTCAGAAGAAATTTTTCCACAA 82231323 Score = 107 bits (118), Expect = 3e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 || ||||||| ||||| ||| |||||| |||||||||||||| || | || ||||| Sbjct 82229426 GTTTGGAACAACTGCTCATCATCCCATTCAGGATGTTCTTGTTTAAGGATGTCACACACA 82229485 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | ||| ||||||| || | || || ||||||||||| | || || || | |||||| Sbjct 82229486 CGGTTATGTTCCCGAAGATATATTGTAGCGTACATCATCAAACCTGGAACTAAGCCAAAT 82229545 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | ||||| || ||||| | || | ||| || | | || || |||||||| | Sbjct 82229546 ACTTCTTGTCCAACAGCAAATTTCAGATGTTCAGGGATATGAGGTGGGTAGATCATTTCT 82229605 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 |||| ||||| || |||| ||||| | ||| || ||||| Sbjct 82229606 ACCTCAGTATCTTTCACTAAGGGAGGATATACTTCTCCATCAAT 82229649 >seq1 Length=748055161 Score = 122 bits (134), Expect = 1e-22 Identities = 210/305 (69%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338 || || |||||||| | | | | |||||| ||||| ||| ||| ||||| ||| Sbjct 415959386 TCAGGCACTCGGAATGAGACGTAGGGACACATTTTGACATTGAGACAAACTAGCTTCTGC 415959327 Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398 | || || ||||||| | || || || || || || ||||||||||||||| Sbjct 415959326 AACGTGGCTGTCTTGACAAGGTTAAAGCCAGTTTCACCACCAAATGTGCTGGGCTTCCAG 415959267 Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458 ||| | || ||||||||| |||| ||| ||| || ||||||||||| || ||||| | | Sbjct 415959266 TACTCTGGAGAGCAGATGGGGTTCCCCAAGAGTCCCTTGAGGGAGAAAGGGGCCCCAATC 415959207 Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518 || | || ||||| || ||||| | |||||| | | || || | | || || | | Sbjct 415959206 TCCACCATACTCTCCCCAAAGATAGAGTTGGGCAGAGATTTCTCTATAAGTAAACCTGGG 415959147 Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTT 8578 | | ||||| ||| || | |||||| || || || ||||| || | ||| ||| Sbjct 415959146 AAGAACTCCAGAGCATCAATGTCTCCATACAGTTCCTCCAGTTCTGCTGATTTCTGCTTC 415959087 Query 8579 TCTCC 8583 ||||| Sbjct 415959086 TCTCC 415959082 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 |||| | || |||||||| | ||||||||| |||| ||||||||| | | |||| Sbjct 415952481 CAAAGGAGTCAGGCATGAGTGGATGCCAGTGGTACAGATGGTTAAACTCCAAGGAGATAC 415952422 Query 9122 GATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAAT 9181 | ||||||||||| ||| | ||||| |||| |||||| | |||| ||||| || Sbjct 415952421 GGTTTTGGTACTGAAACTGGATTCCAAACAGCATTTCGGGGTCAAACTTCAGCTTCAAGA 415952362 Query 9182 GGTAGCCGCTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCC 9236 ||||| || || ||||| || |||| | || | || ||| ||||||| ||||| Sbjct 415952361 AATAGCCACTAAGGTGCTGCACATATT-CTTCAATGACAATCCTGATGGTCTCCCC 415952307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716831851824640