Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monodelphis_20domestica_20[refseq_20GCF_5F000002295.2_202007-01-25] 5,016 sequences; 3,598,443,077 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 125 7e-24 seq7 91.5 1e-13 >seq2 Length=541556283 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || |||||||| Sbjct 520270705 AGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 520270646 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 520270645 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 520270586 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | |||||| || | ||||||||||| || Sbjct 520270585 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 520270526 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 520270525 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 520270487 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || |||||||| Sbjct 520270933 AGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 520270874 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 520270873 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 520270814 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | |||||| || | ||||||||||| || Sbjct 520270813 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 520270754 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 520270753 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 520270715 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || |||||||| Sbjct 520271161 AGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 520271102 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 520271101 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 520271042 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | |||||| || | ||||||||||| || Sbjct 520271041 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 520270982 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 520270981 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 520270943 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || |||||||| Sbjct 520271389 AGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 520271330 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 520271329 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 520271270 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | |||||| || | ||||||||||| || Sbjct 520271269 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 520271210 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 520271209 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 520271171 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || |||||||| Sbjct 520271845 AGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 520271786 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 520271785 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 520271726 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | |||||| || | ||||||||||| || Sbjct 520271725 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 520271666 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 520271665 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 520271627 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || |||||||| Sbjct 520272073 AGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 520272014 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 520272013 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 520271954 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | |||||| || | ||||||||||| || Sbjct 520271953 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 520271894 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 520271893 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 520271855 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || |||||||| Sbjct 520272301 AGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 520272242 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 520272241 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 520272182 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | |||||| || | ||||||||||| || Sbjct 520272181 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 520272122 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 520272121 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 520272083 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || |||||||| Sbjct 520272529 AGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 520272470 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 520272469 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 520272410 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | |||||| || | ||||||||||| || Sbjct 520272409 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTG 520272350 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 520272349 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 520272311 Score = 125 bits (138), Expect = 7e-24 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | |||||||| || ||| || ||||| ||||| ||||| Sbjct 520272770 ACAGCCACCCCTAAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTC 520272711 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || |||||||| | || || ||||||||||| || || || || | ||| ||||| | Sbjct 520272710 AGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 520272651 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || ||| ||||| |||||| ||| | | | |||||| || | ||| Sbjct 520272650 GGGGATGCCCTCTTTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTC 520272591 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||| || || || || || ||||| ||||| || || ||||||||| Sbjct 520272590 CACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 520272539 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||||| || ||| || ||||| ||||| ||||| || |||||||| Sbjct 520271617 AGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGG 520271558 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || ||| Sbjct 520271557 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCT 520271498 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| ||| | | | |||||| || | ||| ||||||| || Sbjct 520271497 TTGTCTTGGATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCTACCTCCAGGGTG 520271438 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 520271437 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 520271399 Score = 118 bits (130), Expect = 1e-21 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||||| || ||| || ||||| ||||| ||||| || |||||| | | || || Sbjct 253694379 ACCAGATGGAGGGTGGGTTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGGCCATCTTCC 253694438 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||| | || ||||| || | ||| ||||| | |||| || ||| ||||| | Sbjct 253694439 AGCTGCTTGACTGCAAATATGAGCCTCTGCTGGTCGGGGGGAT-GCCCTCTTTGTCTTGG 253694497 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||| | | | |||||| || | ||||||||||| || || || ||| Sbjct 253694498 ATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 253694557 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| || || ||||||||| Sbjct 253694558 CCTGTCAGGGTCTTCACAAAGATCTGCATG 253694587 >seq7 Length=260857928 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||||| | || || || ||||||||||| ||||| || ||||||| | || || Sbjct 53450088 ACCAGAGGGAGGGTAGATTCTTTCTGAATGTTGTAGTCAGACAGGGTGCAGCCATCTTCC 53450147 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| | || || || | ||| ||||| | | || || ||| ||||| | Sbjct 53450148 AGCTGCTTGCCTGAAAAGATGAGCCTCTGCTGGTCAGGTGCAATGCCCTCTTTGTCTTGG 53450207 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||| | | | |||||| || | ||||||||||| || | || Sbjct 53450208 ATTTTGGCCTTTACATTCTCAATAGTGTCACTGGGCTCCACCTCCAGGGTGGCAATCTTG 53450267 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| || || ||||||||| Sbjct 53450268 CCTGTCAGGGTCTTCACAAAGATCTGCATG 53450297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462275013539200