Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1233 178 1e-39 seq2532 114 1e-20 seq15296 105 5e-18 seq20275 100 2e-16 seq25758 91.5 1e-13 >seq1233 Length=18904 Score = 178 bits (196), Expect = 1e-39 Identities = 310/443 (70%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 18811 GCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC-TGTCAATCAAACTATTTACAG 18869 ||||||| |||||||||||||| || ||||| ||||| || || | | |||| ||| Sbjct 13433 GCTTCCAATGGAGACATTTTGGGGCAGAATACAAAGAGATGAACAT-AGATTATTCCCAG 13491 Query 18870 -CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCG 18928 |||||| | ||||| || || | | || || ||||||||||| | ||| || | | Sbjct 13492 GCAAGGAGTGGATCAACTACAGAAAGCCATTGACACAATTAAAACCAGCCCTGAT-GACA 13550 Query 18929 ACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATG 18988 | || | ||||| | ||||||||||| || ||| | || | |||| ||||||||||| Sbjct 13551 AAGATT-ATTATGTGTTCTTGGAATCCTAAAGATCTTCCTCTGATGGCTCTACCTCCATG 13609 Query 18989 TCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAG 19048 ||||| | || || || || || || ||||| | || || || |||||||| Sbjct 13610 CCACACTCTCTGCCAATTCTATGTATGGAATGGTGAGCTTTCTTGTCAGTTATACCAGCA 13669 Query 19049 ATCGGGGGATATGGG-CCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCT 19107 ||| || |||||| | ||| | || |||||||||||| | ||| | || || |||| Sbjct 13670 ATCTGGAGATATGTGACCTCAGAGTGATGTTCAACATTGCCAGTTATTCCCTGCTCACCT 13729 Query 19108 ACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATG 19167 |||| | | || |||||| || || | || ||||| |||| ||| |||| |||| Sbjct 13730 ACATGATCACTCACATTACAGTCCTGAAGCCAGGTGATTTTGTTCACACACTGGGAGATG 13789 Query 19168 CACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAAC 19227 | ||| | || ||||||||||| ||| | | ||| | ||| | || |||| || Sbjct 13790 CTCATCTATATTTGAATCATATTGATCCACTGAAAATTCAGATTCAGTGAGAACCAAGAC 13849 Query 19228 CTTTTCCTTGCCTTAAAATTATT 19250 |||| ||| || |||||| || Sbjct 13850 CTTTCCCTAAGCTCAAAATTCTT 13872 >seq2532 Length=66247 Score = 114 bits (126), Expect = 1e-20 Identities = 430/675 (64%), Gaps = 22/675 (3%) Strand=Plus/Minus Query 18586 TGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTT 18645 |||||| || ||||| | || | || ||||| | | || || |||| ||| || | Sbjct 37155 TGCAAGTCCGTTACAACCTCTGAGAGGAGCTTCCTTTGCTGACAACCAAGCCTGTGTTCT 37096 Query 18646 GGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAAC 18705 ||| || | |||| | || | |||||||| || || || || | ||||| | Sbjct 37095 GGAAGGGTGAGCTGGAGAAACTGCTGTGGTTTATTAAGGGTTCCACAAATGCTAAAGAGC 37036 Query 18706 TCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGA 18765 || | || ||||| | | || |||||| | ||||| | | ||| | | | | Sbjct 37035 TCTCTGCCAAAGAAGTGAAAATCTGGGATGCCAATGGATCTCGAGACTTTTTGGACAAGC 36976 Query 18766 ATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGAC 18825 | || ||| || || | || || | || || | || || ||||||||||||| Sbjct 36975 AGGGGTTCACTACCAGGGAGGAAGGAGATTTGGGACCAGTGTATGGTTTCCAGTGGAGAC 36916 Query 18826 ATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGC 18885 ||| ||| || ||||| ||||| | || | |||| ||||||| || | || Sbjct 36915 ATTGTGGGGCAGAATACAAAGAGATGAACACAGATTATTCTGGGCAAGGAGTCATTGAG- 36857 Query 18886 TGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGT 18945 |||| | ||||| ||||| || | || | || ||||| | Sbjct 36856 -GCAACC----------------AAAACCAACCCTGATGACAGAAGGATCATTATGTGTA 36814 Query 18946 CTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGT 19005 |||||||||| || ||| | || | |||| ||| ||||||| || | | | |||| Sbjct 36813 CTTGGAATCCTAAAGATCTTCCTCTGATGGCACTGCCTCCATACCATGCTCTCTACCAGT 36754 Query 19006 TTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCC 19065 | || || || ||||| | | || ||| |||||||| ||| || || ||||||| Sbjct 36753 TCTATGTATTGAATGGTGAGCTTTTTTGTCAACTATACCAGTGATGTGGAGACATGGGCC 36694 Query 19066 TTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTA 19125 | ||| | ||||||||||| | ||| | || || |||||||| | || || | Sbjct 36693 TCCAGGTGTCATTCAACATTGCCAGTTATTCCCTGCTCACCTACATGATTGCTCACATCC 36634 Query 19126 CAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATC 19185 |||| || || | || ||||| | || | |||| ||||| || || |||||||||| Sbjct 36633 CAGGCCTAAAGTCAGGTGATTTTGTACACATTCTGGGAGATGCTCACATATACTTGAATC 36574 Query 19186 ATATAGATGCTTTAAAAGTGCAGCT--AGCTCGATCCCCAAAACCTTTTCCTTGCCTTAA 19243 |||| | | | ||| | ||| | ||| || |||| |||||| || || || Sbjct 36573 ATATTGGGCCACTGAAAATTCAGATTCAGCAAGA--ACCAAGACCTTTCCCAAAGCTCAA 36516 Query 19244 AATTATTCGAAATGT 19258 |||| ||| ||| || Sbjct 36515 AATTCTTCAAAAAGT 36501 >seq15296 Length=69570 Score = 105 bits (116), Expect = 5e-18 Identities = 286/439 (65%), Gaps = 18/439 (4%) Strand=Plus/Minus Query 18815 CCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGG 18874 || ||||||||||||||| | |||| ||||| | || | |||| |||||| Sbjct 64348 CCTGTGGAGACATTTTGGGACTGAATGCAAAGAGATGAACACAGATTATTCTGGGCAAGG 64289 Query 18875 AATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAAT 18934 | | ||||| | || | || || || ||||| |||| ||||| || | || | || Sbjct 64288 AGTGGATCAAGTACAGAAAGTCATGGACACAATCGAAACCAACCCTGATGACAGAAGGAT 64229 Query 18935 GATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACAC 18994 ||||| | |||| ||||| || || | || | |||| ||| |||||||| || | Sbjct 64228 CATTATGTGTGCTTGAAATCCTAAAGAACTTCCTCTGATGGCACTGCCTCCATGCCATGC 64169 Query 18995 GTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGG 19054 | || ||||| ||||| || ||||| | || || || ||||| Sbjct 64168 TCTCTGCCAGTTCTACGTATTGAATGGTGAGCTTTCTTGTCAGCTATAC----------- 64120 Query 19055 GGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGT 19114 ||||||| | | || | ||||||||||| | | | | || || |||||||| | Sbjct 64119 ---TATGGGCTTCAGTGTGTCATTCAACATTGCCAGTTCTTCCCTACTCACCTACATGAT 64063 Query 19115 AGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATAT 19174 || || || ||||| || || | || ||||| | || || |||| ||||| || || Sbjct 64062 TGCTCACGTCACAGGCCTGAAGCCAGGTGATTTTGTACACACTCTGGGAGATGCTCACAT 64003 Query 19175 TTACTTGAATCATATAGATGCTTTAAAAGTGCAGCT--AGCTCGATCCCCAAAACCTTTT 19232 |||| |||||||| | | || ||| | ||| | ||| || ||| |||||| Sbjct 64002 GCACTTCAATCATATTGTGTCATTGAAAATTCAGATTCAGCAAGA--ATCAAGACCTTTC 63945 Query 19233 CCTTGCCTTAAAATTATTC 19251 ||| || |||||| ||| Sbjct 63944 CCTAAGCTCAAAATTCTTC 63926 >seq20275 Length=61036 Score = 100 bits (110), Expect = 2e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| |||||||| || | | || ||||| ||||| || ||||| | || Sbjct 38229 ATGGCACTGCCTCCATGCCATGCTCTCTGCCAGTTCTACGTACTGAATGGTGAGCTTTCT 38170 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || || | |||||| | || || || |||||||| ||||| ||||||||||| || | Sbjct 38169 TGTCAGCTGTACCAGCGCTCTGGAGACATGGGCCTCGGGGTGCCGTTCAACATCGCCAGT 38110 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAA 19136 ||||| || || |||||||| | || ||||| ||||| || ||| Sbjct 38109 TATGCCCTGCTCACCTACATGATTGCTCATGTCACAGGCCTGAAA 38065 >seq25758 Length=7456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 18796 TTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAAT 18855 |||| |||| || ||||||||||||||||||||||| || ||||||||||| | Sbjct 2569 TTGGGACCATGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATATAAAGAGATAAACA 2628 Query 18856 CAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAA 18915 || | |||| | ||||| | ||||| || || | || | || ||||| ||||| | Sbjct 2629 CAGATTATTCCAGGAAAGGAGTGGATCAACTACAGAAAGTCGTTGACACAATCAAAACCA 2688 Query 18916 ACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGAT-ATCCCCTTAATG 18974 |||| | | | | | | || ||||| | |||||||||| || || || | | | ||| Sbjct 2689 ACCCTG-ATGACAAAGGATCATTATGTGTTCTTGGAATCGTAAAAATCATTCTC-TGATG 2746 Query 18975 GTACTACCTCCATG 18988 | ||| |||||||| Sbjct 2747 GCACTGCCTCCATG 2760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398151837637995