Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq92824 376 3e-99 seq34511 361 6e-95 seq19303 120 4e-22 seq100634 109 6e-19 seq14936 104 3e-17 seq24704 98.7 1e-15 >seq92824 Length=186084 Score = 376 bits (416), Expect = 3e-99 Identities = 443/599 (74%), Gaps = 3/599 (1%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| ||||| ||||| || ||||| ||||| | |||||| ||||||||||| | ||| Sbjct 146041 TGTTTGAACATTAAACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTAATAAGTTCA 146100 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| || | || ||||||| || || || || ||||| |||||||| ||||| Sbjct 146101 TTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAA 146160 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCG 24299 || ||||||||||| |||||||| || |||||||| || | || | ||| ||||| Sbjct 146161 GAACCAGAAAAGAAGATTCCTTCAACAGCCGCAAAAGCTACAACACGTTCACCATATGTT 146220 Query 24300 GCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 || ||||| |||||| ||||| || || |||||||| |||||||||| Sbjct 146221 GCTTCTCTGTCCCCAATCCACCGCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGCAGC 146280 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 || || || ||||| |||||| | | | |||| || || |||| ||| || ||||| Sbjct 146281 GTTTCAATGGCATTGAAGAGAAATTCTCTTTCTTTGGGGTCCTTAATATAAGTGTCAATA 146340 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | |||||||||||||| ||||| |||||||| || || ||||| || || |||||||| Sbjct 146341 AGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAG 146400 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | ||| || || | |||||||||| | || || || | ||||||||||| ||||| Sbjct 146401 CGAGCTTCAGTCACCTGTACTTCTTGGCTGAACCGCTCCACCAAATTTTCATTTACTATG 146460 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 || ||||| |||||||| || || || | || ||| || ||||| || || || | Sbjct 146461 CCATCACTTGCTGCAAAGAAAGCTAACTCGTGAGATATGAAGTATTTCTCCTCAGGCTTC 146520 Query 24597 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 ||| | | ||| | | ||||| ||||| | |||||| || || | ||||| || || Sbjct 146521 AGTGTTTCCCAGTGCTGAATATCCTTAGAGAGATCCACCTCCTCAGCCGTCCAGAAGGAG 146580 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||||||| || |||||||| | ||| |||||||| || ||||| || || || || || Sbjct 146581 GCCTCTGCTTTCTTATACATGTGCCAAATGTCATGGTACTGAATGGGGAAGATGACGAA 146639 >seq34511 Length=68903 Score = 361 bits (400), Expect = 6e-95 Identities = 656/949 (69%), Gaps = 23/949 (2%) Strand=Plus/Plus Query 23777 ATTTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACAT 23833 |||| ||| | || ||||| |||| || | |||| ||| || || || ||||| Sbjct 59377 ATTTCAGTTCATCTAGAAGTCTGCATCCAAGGTAAAAGAATTCTCAGCTGGACTTGACAT 59436 Query 23834 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAA 23893 |||||| || | || ||||| || || | || || || || || ||||| ||||| | Sbjct 59437 CACTCCCGTTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCGA 59496 Query 23894 TGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTT-TAAATCCCA 23952 ||| ||||| ||||| ||||| ||||||| | || ||| |||| |||| || | Sbjct 59497 TGAGATATTATCCATAAAATCAAATGGATTTTCTGCTCTA-AGAATCTTGCTAAAACCTA 59555 Query 23953 ATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCA 24012 ||| | || | ||| ||||| ||||| || || || ||||| | ||||||| Sbjct 59556 GTTCCAACATAACTCTGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTGCAATTCA 59615 Query 24013 TTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGT 24072 |||| || | || || || | ||| |||| | ||| || ||||| || || || | Sbjct 59616 TTCCAATCAACTTTACAGGTAAAGCTTCAGTTAAAAACTCCTGTTCTATTTTAACAGCAT 59675 Query 24073 CTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACAT 24130 | || || | ||||| ||||||| || || ||| || ||||| ||||| Sbjct 59676 CG---ATGATTTCTTTTACTTTTTCTTCTGAAGGCTTGTGTACCATG--TGTTTGAACAT 59730 Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||||| || ||||| ||||| | |||||| ||||||||||| | ||| |||||||| || Sbjct 59731 TAAACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTAATAAGTTCCTTGGAAAAAGT 59790 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 | ||| ||||||| | | | || || ||||| |||||||| ||||| || ||||||| Sbjct 59791 TAATCCAGGCATTAAGTCTCATTTCTTTAGCCAGAATATGGATGCAAAAGAACCAGAAAG 59850 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTC 24307 ||| |||||||| || || ||||| || | ||| | ||||| | | ||||| Sbjct 59851 GAAGATTCCTTCAACAGCTGCAAAAGCTACAAG----ACGCCATATGTTGCCTCTCTGTC 59906 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 ||||| ||||| || || |||||||| |||||||| | | || | || Sbjct 59907 CCCAATCCATCGCAACGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGCATTTCAAAGGC 59966 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 ||| |||||| | || || || || |||| ||| || ||||| | |||||||| Sbjct 59967 ATTGAAGAGA-AATTCCCTTTTTTGGGGTCCTTAATATAAGTGTCAATAAGGAGACTATA 60025 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACA-TCTAGCCTCGG 24486 |||||| ||| |||||||| || || ||||| || || ||||||| | ||| || | Sbjct 60026 CATTTCAACATGTATGTTTTCCATAGCAATTTGGAAGCC--AGAAACAGGCGAGCTTCAG 60083 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 | |||||||||| | || | || | ||||||||||| ||||| || ||||| | Sbjct 60084 CGACCTGTACTTCTTGGCTGAACTGCTCCACCAAATTTTCATTAACTATGCCATCACTTG 60143 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606 ||||||| || || || ||||| ||| || ||||| | | | | ||| | | || Sbjct 60144 CTGCAAAGAAAGCTAACACATGAGATATGAAGTATTTCTTCTTAGACTTCAGTGTTTCCC 60203 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | | ||||| ||||| | |||||| || || |||||| || || |||| ||| | Sbjct 60204 AGTGCTGAATATCCTTAGAGAGATCCACCTCCTCAGTTGTCCAGAAGGAGGCCTTTGCTT 60263 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | |||||||| | ||| || ||||| || ||||| || || |||||||| Sbjct 60264 TCTTATACATGTGCCAAATATCATGGTACTGAATGGGGAAGATAACAAA 60312 >seq19303 Length=70460 Score = 120 bits (132), Expect = 4e-22 Identities = 242/355 (68%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 21884 CCGGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTTC 21943 || ||||| ||||| |||| |||| | || || ||||| ||| || |||| Sbjct 43172 CCAGTTGAACCAAAACCTTCTGCTCCACGTTCAGTGTCATCTAAGCCTTGGACCTCTTCA 43113 Query 21944 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTTACA 22003 |||||||||||| | | |||| | | || ||||| || || | || ||| | || || Sbjct 43112 AGTTCTGGATAAAAAACCCGTTCACAAATCAGCTGGGCAATCCGGTCACCCTTTTTCACT 43053 Query 22004 TTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCTTCG 22063 | |||||| | ||| ||| |||| || | || || | ||||||||| |||||||| Sbjct 43052 TCAAATGTTTCTTTGCCAAAGTTAAAGAGTACAACACCAACATTTCCCCTGTAATCTTCA 42993 Query 22064 TCTATTACACCGCCTCCTATATCAATG---CCTTTTAGGGACAGACCAGACCTAGGAGCT 22120 ||||| ||||| |||| | ||| ||| |||| | || ||||| | ||||| Sbjct 42992 TCTATGACACCAGCTCCCACATCTATGAAATGTTTTGCAGCCAAGCCAGAACGTGGAGCA 42933 Query 22121 ATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGTCTT 22180 | ||||||||| || ||| | ||||| ||| |||||||| | | || ||| Sbjct 42932 ACTCTACCATAACACCCAGGAGGGAGAGACATCTGAATGTCTGTCTTCA--CAATGGCTT 42875 Query 22181 TCTCC-TGG-AGGGATAGTATAATCATAAGCGCTATATAAATCATATCCGGCGGC 22233 ||||| ||| || || ||| ||||||| || || || | || || || ||||| Sbjct 42874 TCTCCATGGCTGGTATTGTACAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 42820 >seq100634 Length=30925 Score = 109 bits (120), Expect = 6e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| |||| || |||||||| ||||| || ||||| || ||||| | Sbjct 3504 ACCTGAAATTCTCCTGACAGGACCCTCCGAGTATAAATGTTGCTGGTGTAAGGTTCGATG 3563 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || |||||||| || ||||| |||||||| || ||||| ||||| || || | || ||| Sbjct 3564 GATTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAA 3623 Query 53270 CTATTTCT 53277 || ||||| Sbjct 3624 CTGTTTCT 3631 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || ||| ||||||||||||||||| || ||||| || || | ||| ||||| |||| || Sbjct 12746 CTCCACACGTTTCATAAAGAGATCCGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCG 12805 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || || || || ||||| || || || ||||| | | ||||| | ||||| Sbjct 12806 CTGCTCTTCCTTCCCAGTGTTCTTCTTCAGGTCAAGGAATTCAAAGATATCTAAGTGCCA 12865 Query 54145 CGGTTCCAAGTATATGG 54161 || |||||||| |||| Sbjct 12866 TGGCTCCAAGTAGATGG 12882 >seq14936 Length=40044 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 |||||||| ||||||| || ||||||| |||| ||||||||| |||||||||||| || Sbjct 39865 ACTTCTTCAGCTGTCCAGAAGGATGCCTGGGCCTGTTTATACATCTTCCAGATGTCAGGA 39924 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || |||||||||||||| ||||||| Sbjct 39925 TACTGAATTGGAAAAATGACAAATC 39949 >seq24704 Length=62651 Score = 98.7 bits (108), Expect = 1e-15 Identities = 94/119 (79%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||||||||| | ||| |||||||| || | || ||||||| || || || | Sbjct 10249 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCT 10190 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 24275 | |||| | ||||||| ||||| || |||||||||| |||||||| || || |||||| Sbjct 10189 TGAGCC-AGATATGGATGCAAAAGAACCAGAAAAGACGATTCCTTCAACAGCTGCAAAG 10132 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || |||| ||| || ||||| | |||||||||||||| ||||| |||||||| || || Sbjct 6761 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 6702 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | ||| || || | |||||||||| Sbjct 6701 ATTTGGAAGCCATAGAAACAGCGAGCTTCAGTCACCTGTACTTCT 6657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591660562259280