Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq34511 316 2e-81 seq92824 242 3e-59 seq24704 107 2e-18 seq14936 89.7 5e-13 >seq34511 Length=68903 Score = 316 bits (350), Expect = 2e-81 Identities = 612/894 (68%), Gaps = 17/894 (2%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| | || | |||||||| | |||||||| |||||||| || ||||| | Sbjct 59430 TTGACATCACTCCCGTTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCC 59489 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC 16046 |||| |||| ||||| |||||||||||||| ||||||| || | | || || | | Sbjct 59490 CTTCCGATGAGATATTATCCATAAAATCAAATGGATTTTCTGCTCTA-AGAATCTTGCTA 59548 Query 16047 ATCCCAA-TTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCA 16105 | || | |||||||| | ||| || || |||||||| || ||||| ||||||||| Sbjct 59549 AAACCTAGTTCCAACATAACTCTGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTG 59608 Query 16106 CAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTA 16165 || |||||||| || || || ||||| | ||||| |||||||| | | |||||| ||| Sbjct 59609 CAATTCATTCCAATCAACTTTACAGGTAAAGCTTCAGTTAAAAACTCCTGTTCTATTTTA 59668 Query 16166 ACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTA 16225 || || || |||||| ||| ||||| | | | || || || | |||||| Sbjct 59669 ACAGCATCGATGATT---TCTTTTACTTTTTCTTCTGAAGGCTTGTGTACCATGTGTTTG 59725 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 ||||||| ||| ||||||||||| ||||| || || || ||||| || | || || ||| Sbjct 59726 AACATTAAACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTAATAAGTTCCTTGGAA 59785 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | || ||||||| ||| ||| || | ||| ||||| | ||||| |||||| Sbjct 59786 AAAGTTAATCCAGGCATTAAGTCTCATTTCTTTAGCCAGAATATGGATGCAAAAGAACCA 59845 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT--CTAt 16403 |||| ||| || |||||||| || ||||| || || | || || || ||| || | Sbjct 59846 GAAAGGAAGATTCCTTCAACAGCTGCAAAAGCTACAAGACG----CCATATGTTGCCTCT 59901 Query 16404 ttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCT 16463 | | | | |||||| ||||| | ||||| | ||||||||| | | | Sbjct 59902 CTGTCC--CCAATCCATCGCAACGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGCATTT 59959 Query 16464 CTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTA 16523 | | ||||| || | | |||| || |||| || ||||||||| || || || | Sbjct 59960 CAAAGGCATTGAAGAGA-AATTCCCTTTTTTGGGGTCCTTAATATAAGTGTCAATAAGGA 60018 Query 16524 AACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAA-AGCATCTA 16582 |||||||||||| ||| || || ||||| || || || || ||| ||| || | | Sbjct 60019 GACTATACATTTCAACATGTATGTTTTCCATAGCAATTTGGAAGCCAGAAACAG--GCGA 60076 Query 16583 GCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCA 16642 ||||| | | |||||||| | ||| || | || ||||| |||||||| ||| Sbjct 60077 GCTTCAGCGACCTGTACTTCTTGGCTGAACTGCTCCACCAAATTTTCATTAACTATGCCA 60136 Query 16643 TCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT 16702 || || |||||||| || || | | || || || | ||| | ||| ||| Sbjct 60137 TCACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTATTTCTTCTTAGACTTCAGT 60196 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 || ||||| || ||| || || | ||| ||||| || ||||| || || || Sbjct 60197 GTTTCCCAGTGCTGAATATCCTTAGAGAGATCCACCTCCTCAGTTGTCCAGAAGGAGGCC 60256 Query 16763 ACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 || || |||||||| | ||| || || | ||| ||| || || | |||| Sbjct 60257 TTTGCTTTCTTATACATGTGCCAAATATCATGGTACTGAATGGGGAAGATAACA 60310 >seq92824 Length=186084 Score = 242 bits (268), Expect = 3e-59 Identities = 458/671 (68%), Gaps = 2/671 (0%) Strand=Plus/Plus Query 16128 CAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTC 16187 |||| | ||||| || ||||| | | |||||| |||| || | ||||| || || Sbjct 145949 CAGGCAAAGCTTCAGTCAAAAATTCCTGTTCTATTCTAACAGCATTGATGATAATTTCCT 146008 Query 16188 TTACTACA-CTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCA 16246 ||||| || | || || || || | |||||| ||||||| ||| ||||||||| Sbjct 146009 TTACTTTTTCTGCTGAA-GGCTTGTGTACCAGGTGTTTGAACATTAAACAGGCAAAATCA 146067 Query 16247 CAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGT 16306 || ||||| || || || ||||| || | || || ||||| || | || ||||||| Sbjct 146068 CAGTGCAAACCCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTAAA 146127 Query 16307 CCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACT 16366 |||||||| || | ||| ||||| | ||||| |||||||||||||| || |||||||| Sbjct 146128 CCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACA 146187 Query 16367 GCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatttttta 16426 || ||||| || || | || ||||| || ||| | | | | ||||| Sbjct 146188 GCCGCAAAAGCTACAACACGTTCACCATATGTTGCTTCTCTGTCCCCAATCCACCGCAAG 146247 Query 16427 gcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAttt 16486 ||||| | ||||| | ||||||||| || | || || ||||| || | | | | | Sbjct 146248 GCCCAGTCAGCTTTCTTTTTAACACAAGGCAGCGTTTCAATGGCATTGAAGAGAAATTCT 146307 Query 16487 ttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 |||||||| || ||||||||| || || || | |||||||||||| ||||| || Sbjct 146308 CTTTCTTTGGGGTCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATG 146367 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAG 16606 || ||||| || || || || ||||| || || | |||||| | | |||||||| | Sbjct 146368 TTTTCCATAGCAATTTGGAAGCCATAGAAACAGCGAGCTTCAGTCACCTGTACTTCTTGG 146427 Query 16607 TAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGT 16666 |||| || | || ||||| || ||||| ||||| || |||||||| || || | Sbjct 146428 CTGAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCTAAC 146487 Query 16667 ATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTT 16726 ||| || || | ||| || | | ||| || ||||| || ||| || Sbjct 146488 TCGTGAGATATGAAGTATTTCTCCTCAGGCTTCAGTGTTTCCCAGTGCTGAATATCCTTA 146547 Query 16727 GATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCAT 16786 || | ||| ||||| || | ||||| || || || | || || |||||||| | ||| Sbjct 146548 GAGAGATCCACCTCCTCAGCCGTCCAGAAGGAGGCCTCTGCTTTCTTATACATGTGCCAA 146607 Query 16787 ATGTCTTCGTA 16797 ||||| | ||| Sbjct 146608 ATGTCATGGTA 146618 >seq24704 Length=62651 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| |||| | |||||||| | |||||||| |||||||| || ||||| | Sbjct 14412 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCC 14353 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTG 16028 |||| ||||| ||||| |||||||||||||| ||||||| || Sbjct 14352 CTTCCAATGAGATATTCTCCATAAAATCAAATGGATTTTCTG 14311 >seq14936 Length=40044 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||| | | || ||||| || || | | || |||||||| | Sbjct 15736 TTAAAAATCTGCATCCAATGTGAAGACATTGTCCGTTGTTTCTGCCATAACTGCAAAACG 15795 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 |||||||| || || |||||||| ||||||||||| ||||| | ||||||||||| Sbjct 15796 CTGATATTCTGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATATTTTC 15855 Query 16006 CATAAAATCAAAAGGATTTTTTGA 16029 ||| |||||||| ||||| | ||| Sbjct 15856 CATGAAATCAAAGGGATTATCTGA 15879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460906441624600