Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq92824 370 1e-97 seq34511 367 2e-96 seq51583 111 2e-19 seq19303 102 1e-16 seq14936 95.1 2e-14 seq100634 91.5 2e-13 seq24704 89.7 6e-13 >seq92824 Length=186084 Score = 370 bits (410), Expect = 1e-97 Identities = 442/599 (74%), Gaps = 3/599 (1%) Strand=Plus/Plus Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCG 33626 ||||| ||||| ||||| || ||||| ||||||| |||||| ||||||||||| | ||| Sbjct 146041 TGTTTGAACATTAAACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTAATAAGTTCA 146100 Query 33627 TTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAAT 33686 || ||||| || | || ||||||| || || || || ||||| |||||||| || || Sbjct 146101 TTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAA 146160 Query 33687 GATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCG 33746 || || ||||||||||||||||| || || ||||| || | || | || ||||| Sbjct 146161 GAACCAGAAAAGAAGATTCCTTCAACAGCCGCAAAAGCTACAACACGTTCACCATATGTT 146220 Query 33747 GCG---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 33803 || ||||| |||||| ||||| || || |||||||| |||||||||| | Sbjct 146221 GCTTCTCTGTCCCCAATCCACCGCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGCAGC 146280 Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 ||||| |||||||| |||||| | | | |||| || || |||| |||||| || || Sbjct 146281 GTTTCAATGGCATTGAAGAGAAATTCTCTTTCTTTGGGGTCCTTAATATAAGTGTCAATA 146340 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 | |||||||||||||| ||||| |||||||| || || || || || || |||||||| Sbjct 146341 AGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAG 146400 Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33983 | ||| || || | ||| |||||| | || || || | ||||||||||| ||||| Sbjct 146401 CGAGCTTCAGTCACCTGTACTTCTTGGCTGAACCGCTCCACCAAATTTTCATTTACTATG 146460 Query 33984 CCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 34043 |||||||| |||||||| || || || | || ||| || ||||| || || || | Sbjct 146461 CCATCACTTGCTGCAAAGAAAGCTAACTCGTGAGATATGAAGTATTTCTCCTCAGGCTTC 146520 Query 34044 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 34103 ||| | | ||| | | ||||| ||||| | |||||| || || | ||||| || || Sbjct 146521 AGTGTTTCCCAGTGCTGAATATCCTTAGAGAGATCCACCTCCTCAGCCGTCCAGAAGGAG 146580 Query 34104 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||||||| || |||||||| | ||| |||||||| || || || ||||| || || || Sbjct 146581 GCCTCTGCTTTCTTATACATGTGCCAAATGTCATGGTACTGAATGGGGAAGATGACGAA 146639 >seq34511 Length=68903 Score = 367 bits (406), Expect = 2e-96 Identities = 651/943 (69%), Gaps = 11/943 (1%) Strand=Plus/Plus Query 33224 ATTTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACAT 33280 |||| ||| | || ||||| |||| || | |||| ||| || || || ||||| Sbjct 59377 ATTTCAGTTCATCTAGAAGTCTGCATCCAAGGTAAAAGAATTCTCAGCTGGACTTGACAT 59436 Query 33281 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAA 33340 |||||| || | || ||||| || || | || || || || || ||||| |||||| | Sbjct 59437 CACTCCCGTTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCGA 59496 Query 33341 TGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAA 33400 ||| ||||| ||||| |||||||| ||||| | | ||| || |||| || | Sbjct 59497 TGAGATATTATCCATAAAATCAAATGGATTTTCTGCTCTAAGAATCTTGCTAAAACCTAG 59556 Query 33401 TTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCAT 33460 ||| | || | ||| ||||| || ||||| || || ||||| | |||||||| Sbjct 59557 TTCCAACATAACTCTGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTGCAATTCAT 59616 Query 33461 TCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATT 33520 ||| || | || || || | ||| |||| | ||| || ||||| || || |||| Sbjct 59617 TCCAATCAACTTTACAGGTAAAGCTTCAGTTAAAAACTCCTGTTCTATTTTAACAGCATC 59676 Query 33521 TGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAA 33580 || || | | || ||||||| || |||| | ||||| ||||| || Sbjct 59677 G---ATGATTTCTTTTACTTTTTCTTCTGAAGGCTTGTGTACCATGTGTTTGAACATTAA 59733 Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || ||||| ||||||| |||||| ||||||||||| | ||| || ||||| || | Sbjct 59734 ACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTAATAAGTTCCTTGGAAAAAGTTAA 59793 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 ||| ||||||| | | | || || ||||| |||||||| || || || || |||| ||| Sbjct 59794 TCCAGGCATTAAGTCTCATTTCTTTAGCCAGAATATGGATGCAAAAGAACCAGAAAGGAA 59853 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 33760 ||||||||| || || ||||| || | ||| | | | | || | ||||| || Sbjct 59854 GATTCCTTCAACAGCTGCAAAAGCTACAAGACGCCATATGTTGCCT-CTCTGTCCCCAAT 59912 Query 33761 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 33820 ||| ||||| || || |||||||| |||||||| | | |||| | |||||| || Sbjct 59913 CCATCGCAACGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGCATTTCAAAGGCATTGAA 59972 Query 33821 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 33880 |||| | | ||| || || |||| |||||| || || | |||||||||||||| Sbjct 59973 GAGAAATTCCCTTTT-TTGGGGTCCTTAATATAAGTGTCAATAAGGAGACTATACATTTC 60031 Query 33881 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT-CTAGCCTCGGTAATCT 33939 ||| |||||||| || || || || || || ||||||| | ||| || | | || Sbjct 60032 AACATGTATGTTTTCCATAGCAATTTGGAAGCC--AGAAACAGGCGAGCTTCAGCGACCT 60089 Query 33940 GCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 | |||||| | || | || | ||||||||||| ||||| |||||||| ||||||| Sbjct 60090 GTACTTCTTGGCTGAACTGCTCCACCAAATTTTCATTAACTATGCCATCACTTGCTGCAA 60149 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 34059 | || || || ||||| ||| || ||||| | | | | ||| | | ||| | | Sbjct 60150 AGAAAGCTAACACATGAGATATGAAGTATTTCTTCTTAGACTTCAGTGTTTCCCAGTGCT 60209 Query 34060 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 34119 ||||| ||||| | |||||| || || |||||| || || |||| ||| || |||| Sbjct 60210 GAATATCCTTAGAGAGATCCACCTCCTCAGTTGTCCAGAAGGAGGCCTTTGCTTTCTTAT 60269 Query 34120 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||| | ||| || ||||| || || || ||||| |||||||| Sbjct 60270 ACATGTGCCAAATATCATGGTACTGAATGGGGAAGATAACAAA 60312 >seq51583 Length=75798 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 || ||||||||||||| | | | ||| | |||||||| |||||||||||||| |||||| Sbjct 71075 GTGACTTTCTATGATGTGTATGTTGTTCTGCAAGCTTTTATGTTGACTACTGCGGTGTTT 71134 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| | ||| ||||||| |||||||||||||| ||| ||| | |||| Sbjct 71135 CTTGGTTTGACTCTGTACACTTTACAATCCAAGAGAGATTTCAGCAAATTTGGAGCAGG 71193 >seq19303 Length=70460 Score = 102 bits (112), Expect = 1e-16 Identities = 237/355 (67%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 31300 CCTGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTCA 31359 || ||||| ||||| |||| |||| | || || ||||| ||| || |||||| Sbjct 43172 CCAGTTGAACCAAAACCTTCTGCTCCACGTTCAGTGTCATCTAAGCCTTGGACCTCTTCA 43113 Query 31360 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTTACA 31419 |||||||||||| | | |||| | | || ||||| || || | || || | || || Sbjct 43112 AGTTCTGGATAAAAAACCCGTTCACAAATCAGCTGGGCAATCCGGTCACCCTTTTTCACT 43053 Query 31420 TTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCG 31479 | ||| || ||| ||| |||| || | || || | |||||||| |||||||| Sbjct 43052 TCAAATGTTTCTTTGCCAAAGTTAAAGAGTACAACACCAACATTTCCCCTGTAATCTTCA 42993 Query 31480 TCTATTACACCGCCTCCTATATCAATG---CCTTTTAGGGACAGACCAGACCTAGGAGCT 31536 ||||| ||||| |||| | ||| ||| |||| | || ||||| | ||||| Sbjct 42992 TCTATGACACCAGCTCCCACATCTATGAAATGTTTTGCAGCCAAGCCAGAACGTGGAGCA 42933 Query 31537 ATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGTCGT 31596 | ||||||||| || ||| | ||||| ||| |||||||| | | || | | Sbjct 42932 ACTCTACCATAACACCCAGGAGGGAGAGACATCTGAATGTCTGTCTTCA--CAATGGCTT 42875 Query 31597 TCTCCA--GGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCGGCAGC 31649 |||||| | || || ||| |||| || || || |||| || || || || || Sbjct 42874 TCTCCATGGCTGGTATTGTACAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 42820 >seq14936 Length=40044 Score = 95.1 bits (104), Expect = 2e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 |||||||| ||||||| || ||||||| |||| ||||||||| |||||||||||| || Sbjct 39865 ACTTCTTCAGCTGTCCAGAAGGATGCCTGGGCCTGTTTATACATCTTCCAGATGTCAGGA 39924 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || || ||||| ||||| ||||||| Sbjct 39925 TACTGAATTGGAAAAATGACAAATC 39949 >seq100634 Length=30925 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||| ||||||||||||||||| || ||||| || || | ||| ||||| || | || Sbjct 12746 CTCCACACGTTTCATAAAGAGATCCGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCG 12805 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || || || || ||||| || || || ||||| | | ||||| | ||||| Sbjct 12806 CTGCTCTTCCTTCCCAGTGTTCTTCTTCAGGTCAAGGAATTCAAAGATATCTAAGTGCCA 12865 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||||||| ||||| Sbjct 12866 TGGCTCCAAGTAGATGGC 12883 >seq24704 Length=62651 Score = 89.7 bits (98), Expect = 6e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||||||||| | ||| || ||||| || | || ||||||| || || || | Sbjct 10249 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCT 10190 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAG 33722 | |||| | ||||||| || || || || ||||||| ||||||||| || || |||||| Sbjct 10189 TGAGCC-AGATATGGATGCAAAAGAACCAGAAAAGACGATTCCTTCAACAGCTGCAAAG 10132 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 33237 TAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTT 33293 || ||||| |||| || | |||| ||| || | || ||||| ||||||||| | Sbjct 14452 TAGAAGTCTGCATCCAAGGTAAAAGAATTCTCAGTTGGACTTGACATCACTCCCATTCTC 14393 Query 33294 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCC 33353 || ||||| || || | || || || || || ||||| ||||||||||| ||||| ||| Sbjct 14392 TGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCAATGAGATATTCTCC 14333 Query 33354 ATGAAATCAAACGGATT 33370 || |||||||| ||||| Sbjct 14332 ATAAAATCAAATGGATT 14316 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || |||| |||||| || || | |||||||||||||| ||||| |||||||| || || Sbjct 6761 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 6702 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || || || || |||||||| | ||| || || | ||| |||||| Sbjct 6701 ATTTGGAAGCCATAGAAACAGCGAGCTTCAGTCACCTGTACTTCT 6657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627631259056080