Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq92824 315 7e-81 seq34511 293 2e-74 seq24704 113 4e-20 seq14936 96.9 3e-15 >seq92824 Length=186084 Score = 315 bits (348), Expect = 7e-81 Identities = 480/681 (70%), Gaps = 11/681 (2%) Strand=Plus/Plus Query 11537 GTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTA 11596 |||||||| |||| |||||| |||| |||| ||||| || | ||| ||| Sbjct 145963 GTCAAAAATTCCTGTTCTATTCTAACAGCATTGATGATAATTTCCTTTACTTTTTCTGCT 146022 Query 11597 GATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCG 11656 || || |||| | ||||| ||||||||||| ||||||||||| || ||||| || Sbjct 146023 GAAGGCTTGTGTACCAGGTGTTTGAACATTAAACAGGCAAAATCACAGTGCAAACCCTCA 146082 Query 11657 TCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATC 11716 |||||||| || |||||||| ||||| ||||| || ||||| || |||||||| || | | Sbjct 146083 TCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCTTGAGC 146142 Query 11717 CAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACT 11776 || ||||| | ||||| |||||||||||||| ||||| || ||||| ||||| ||||| Sbjct 146143 CAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCCGCAAAAGCTACA 146202 Query 11777 ACTCTTTCTCCATATACCTTGTTGCTAGAT-----ATCCATTTTCTGGCCCAATCAGCTT 11831 || | ||| |||||| ||| | || | ||||| |||||| ||||||| Sbjct 146203 ACACGTTCACCATATG--TTGCTTCTCTGTCCCCAATCCACCGCAAGGCCCAGTCAGCTT 146260 Query 11832 TCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATA--AATGCATTTTTTCTATATT 11889 ||||||| || || || ||||| || || || || | ||| | | ||||| | Sbjct 146261 TCTTTTTAACACAAGGCAGCGTTTCAATGGCATTGAAGAGAAATTC--TCTTTCTTTGGG 146318 Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 || | | ||| || || || | | |||||||||||| ||||| || ||||||||||| Sbjct 146319 GTCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGC 146378 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||||| || ||||||||||| || || || | |||||| || || | || Sbjct 146379 AATTTGGAAGCCATAGAAACAGCGAGCTTCAGTCACCTGTACTTCTTGGCTGAACCGCTC 146438 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | | ||||| |||||||| || |||||||| | |||||| || |||| || ||| Sbjct 146439 CACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCTAACTCGTGAGATAT 146498 Query 12070 AAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTAC 12129 |||||||| || || | | | | ||||| | | | ||| || || | ||| || Sbjct 146499 GAAGTATTTCTCCTCAGGCTTCAGTGTTTCCCAGTGCTGAATATCCTTAGAGAGATCCAC 146558 Query 12130 TTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATA 12189 || ||| | ||||| || ||| ||| || |||||||| | ||| || ||||| || Sbjct 146559 CTCCTCAGCCGTCCAGAAGGAGGCCTCTGCTTTCTTATACATGTGCCAAATGTCATGGTA 146618 Query 12190 CTTAATAGGGAAAATAACGAA 12210 || ||| ||||| || ||||| Sbjct 146619 CTGAATGGGGAAGATGACGAA 146639 >seq34511 Length=68903 Score = 293 bits (324), Expect = 2e-74 Identities = 625/916 (68%), Gaps = 32/916 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 |||||| || | ||| | ||| ||| | | |||||||| | |||| || | || | Sbjct 59416 ATTCTCAGCTGGACTTGACATCACTCCCGTTCTCTGATATTCTCCTACTC-TCTTCTCAA 59474 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || || || || ||||| ||| |||| |||||||| ||| ||||| | | | Sbjct 59475 AGAAGTTGGTTTTCCCTTCCGATGAGATATTATCCATAAAATCAAATGGATTTTCTGCTC 59534 Query 11427 TGAAGACTTTTTC-ACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATAC 11485 | |||| | || | | |||||| || | | ||| ||||| || ||||| || ||| Sbjct 59535 T-AAGAATCTTGCTAAAACCTAGTTCCAACATAACTCTGTCTGCTACAAATTCAATGTAC 59593 Query 11486 TGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 || ||||||| |||||||| || || | | || || | ||| | || |||||| Sbjct 59594 TGCTTCATTAAAGTGCAATTCATTCCAATCAACTTTACAGGTAAAGCTTCAGTTAAAAAC 59653 Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGA 11605 |||| |||||| ||||| ||||| |||||| || ||| ||| | || || Sbjct 59654 TCCTGTTCTATTTTAACAGCATCGATGATT-TCTT--TTACTTTTTCTTCTGAAGGCTTG 59710 Query 11606 TGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTT 11665 |||| | ||||| ||||||||||| ||||||||||| || ||||| || |||||||| Sbjct 59711 TGTACCATGTGTTTGAACATTAAACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTA 59770 Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || ||||| || ||||| |||||||| ||||| || ||| ||| |||| ||| ||||| Sbjct 59771 ATAAGTTCCTTGGAAAAAGTTAATCCAGGCATTAAGTCTCATTTCTTTAGCCAGAATATG 59830 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | ||||| |||||||||| ||| ||||| || ||||||||||| ||||| | | Sbjct 59831 GATGCAAAAGAACCAGAAAGGAAGATTCCTTCAACAGCTGCAAAAGCTACAA----GACG 59886 Query 11786 CCATA---TACCT---TGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTT 11839 ||||| | ||| ||| | | |||||| ||||| |||||||||||||| Sbjct 59887 CCATATGTTGCCTCTCTGTCCCCA---ATCCATCGCAACGCCCAGTCAGCTTTCTTTTTA 59943 Query 11840 ACGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTA 11897 || || | |||| | || || | | |||| | ||||| | || | | Sbjct 59944 ACACAAGGTAGCATTTCAAAGGCATTGAAGAGAAATTCCCTTTTT---TGGGGTCCTTAA 60000 Query 11898 CATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957 ||| || || || | | |||||||||||| ||| || ||||||||||| ||||| | Sbjct 60001 TATAAGTGTCAATAAGGAGACTATACATTTCAACATGTATGTTTTCCATAGCAATTTGGA 60060 Query 11958 ATCCATAGAAACA-TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAA 12016 | || ||||||| || || || | |||||| || || ||| | ||| Sbjct 60061 AGCC--AGAAACAGGCGAGCTTCAGCGACCTGTACTTCTTGGCTGAACTGCTCCACCAAA 60118 Query 12017 TTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTAT 12076 || ||||| || || |||||||| | |||||| || |||| | ||| ||| ||||| Sbjct 60119 TTTTCATTAACTATGCCATCACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTA- 60177 Query 12077 TTTTCGTCTT-TAGTT-AATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTT 12134 |||| |||| | || | | | ||||| | | | ||| || || | ||| || || | Sbjct 60178 -TTTCTTCTTAGACTTCAGTGTTTCCCAGTGCTGAATATCCTTAGAGAGATCCACCTCCT 60236 Query 12135 CAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAA 12194 || ||||| || ||| || || |||||||| | ||| |||||||| |||| || Sbjct 60237 CAGTTGTCCAGAAGGAGGCCTTTGCTTTCTTATACATGTGCCAAATATCATGGTACTGAA 60296 Query 12195 TAGGGAAAATAACGAA 12210 | ||||| ||||| || Sbjct 60297 TGGGGAAGATAACAAA 60312 >seq24704 Length=62651 Score = 113 bits (124), Expect = 4e-20 Identities = 107/134 (80%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || |||||||| ||||| ||||| || ||||| || |||||||| || Sbjct 10247 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCTTG 10188 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| | ||| | ||||| ||||||||||||| ||||| || ||||||||||| ||| Sbjct 10187 AGCCAGA-TATGGATGCAAAAGAACCAGAAAAGACGATTCCTTCAACAGCTGCAAA-GCT 10130 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 10129 ACAACACGTTCACC 10116 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 11678 GAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAA 11737 ||||| ||||| || ||||| || | ||||| || | ||| ||||| | ||||| ||| Sbjct 10070 GAAAAAGTTAACCCAGGCATTAAAC-TCGTTCTTG-AGCCAGAATATGGATGCAAAAGAA 10013 Query 11738 CCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC 11787 ||||||||||| ||||| || ||||||||||| ||||| || | ||| || Sbjct 10012 CCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCTACAACACGTTCACC 9963 >seq14936 Length=40044 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || || || | || ||||| | |||| || || Sbjct 20548 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGACCAGGCATAAGACCTCTCTTCTTA 20607 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGC-AAATGC 11772 | ||| |||||||||||||| || || || ||||| || || |||||||| || ||| || Sbjct 20608 AGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAAGC 20667 Query 11773 TACTACTCTTTCTCC 11787 || ||||||||||| Sbjct 20668 AACCACTCTTTCTCC 20682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466898368865840