Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq34511 370 1e-97 seq92824 342 5e-89 seq24704 107 2e-18 seq20505 104 2e-17 seq14936 84.2 2e-11 seq58737 82.4 7e-11 >seq34511 Length=68903 Score = 370 bits (410), Expect = 1e-97 Identities = 631/901 (70%), Gaps = 23/901 (3%) Strand=Plus/Plus Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13582 ||| || || |||| || | |||| ||| || || | || || || ||| || | Sbjct 59389 CTAGAAGTCTGCATCCAAGGTAAAAGAATTCTCAGCTGGACTTGACATCACTCCCGTTCT 59448 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 |||||||| | ||||| || ||||||||||| ||||| |||||| ||| ||||| || Sbjct 59449 CTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCGATGAGATATTATC 59508 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 ||||||||||||||||||| || ||| | || | |||||||||| || | | Sbjct 59509 CATAAAATCAAATGGATTTTCTGCTCTAAGAATCTTGCTAAAACCTAGTTCCAACATAAC 59568 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| || || | ||| ||||| || || ||||||| |||||||| || || | || Sbjct 59569 TCTGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTGCAATTCATTCCAATCAACTT 59628 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 |||||| | | |||||||| || | |||||| ||||| || | || | | Sbjct 59629 TACAGGTAAAGCTTCAGTTAAAAACTCCTGTTCTATTTTAACAGCATCGATGAT--TTCT 59686 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13882 | || | | || | ||||| | | | ||||| || |||||||| |||||||| Sbjct 59687 TTTACTTTT-TCTTCTGAAGGCTTGTGTACCATGTGTTTGAACATTAAACAGGCAAAATC 59745 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 ||| || | ||||||||||||||||||||||| || ||||| |||||||| ||||| || Sbjct 59746 ACAGTGCAAACCCTCATCTCTACTAATAAGTTCCTTGGAAAAAGTTAATCCAGGCATTAA 59805 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 ||| ||| |||| ||| ||||| | ||||| || || |||| ||| ||||| ||||| Sbjct 59806 GTCTCATTTCTTTAGCCAGAATATGGATGCAAAAGAACCAGAAAGGAAGATTCCTTCAAC 59865 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 || ||||| |||| | || ||| | | ||| | | ||| | |||||| Sbjct 59866 AGCTGCAAAAGCTACAAGACG----CCATATGTTGCCTCTCTGTCCCCAATCCATCGCAA 59921 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATT- 14121 ||||| |||| ||| ||||||| | || | |||||| ||||| || | | ||| Sbjct 59922 CGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGCATTTCAAAGGCATTGAAGAGAAATTC 59981 Query 14122 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14181 |||| | | || ||| ||| || || |||||||| | |||||||||||| |||| Sbjct 59982 CCTTTTTTGGGGTCCTT--AATATAAGTGTCAATAAGGAGACTATACATTTCAACATGTA 60039 Query 14182 TGTTTTCCATAGCTATCTGAAAACCATAAA-AGCATCTAGCTTC--CGACCATTGTACTT 14238 ||||||||||||| || || || ||| ||| || | |||||| ||||| ||||||| Sbjct 60040 TGTTTTCCATAGCAATTTGGAAGCCAGAAACAG--GCGAGCTTCAGCGACC--TGTACTT 60095 Query 14239 CCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14298 | | || || ||||||||||||||||||| |||||||| |||||||| || | Sbjct 60096 CTTGGCTGAACTGCTCCACCAAATTTTCATTAACTATGCCATCACTTGCTGCAAAGAAAG 60155 Query 14299 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTG--TTGAGTTTTTTCCAAT-CGGATA 14355 | || | | || ||||||| ||||| | | || ||| ||| ||| | | || | Sbjct 60156 CTAACACATGAGATATGAAGTATT--TCTTCTTAGACTTCAGTGTTTCCCAGTGCTGA-A 60212 Query 14356 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14415 ||||||||| ||||| || || ||| |||||| || || ||||| ||||||| Sbjct 60213 TATCCTTAGAGAGATCCACCTCCTCAGTTGTCCAGAAGGAGGCCTTTGCTTTCTTATACA 60272 Query 14416 T 14416 | Sbjct 60273 T 60273 >seq92824 Length=186084 Score = 342 bits (378), Expect = 5e-89 Identities = 418/566 (74%), Gaps = 6/566 (1%) Strand=Plus/Plus Query 13854 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13913 || ||||| || |||||||| ||||||||||| || | ||||||||||||||||||||| Sbjct 146038 AGGTGTTTGAACATTAAACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTAATAAGT 146097 Query 13914 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA 13973 || || ||||| ||||| || ||||| || |||||||| || | ||| ||||| | ||| Sbjct 146098 TCATTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCA 146157 Query 13974 AATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14033 || || || |||||||| ||||| ||||| || ||||| |||| | ||||| ||| | Sbjct 146158 AAAGAACCAGAAAAGAAGATTCCTTCAACAGCCGCAAAAGCTACAACACGTTCACCATAT 146217 Query 14034 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 14093 | ||||| | ||| | ||||| ||||| |||| ||| ||||||| | || | Sbjct 146218 GTTGCTTCTCTGTCCCCAATCCACCGCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGC 146277 Query 14094 ATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT--AGTACTTGAAATGTATGTAT 14151 | |||||||| ||||| || | | |||| | ||||| || ||| ||| || || | Sbjct 146278 AGCGTTTCAATGGCATTGAAGAGAAATTCTCTTTCTTTGGGGTCCTT--AATATAAGTGT 146335 Query 14152 CAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAA 14211 ||||||| | |||||||||||||| ||||||||||||||||| || || || ||||| | Sbjct 146336 CAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGA 146395 Query 14212 AGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAA 14271 | || | |||||| | | |||||||| | || | || ||||||||||||| | Sbjct 146396 AACAGCGAGCTTCAGTCACCTGTACTTCTTGGCTGAACCGCTCCACCAAATTTTCATTTA 146455 Query 14272 CTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14331 |||| |||||||| |||||||| || || || || || ||||||| ||| ||| Sbjct 146456 CTATGCCATCACTTGCTGCAAAGAAAGCTAACTCGTGAGATATGAAGTATTTCTCCTCAG 146515 Query 14332 TGTTGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14390 || ||| ||| ||| | | || | ||||||||| ||||| || || ||| | ||||| Sbjct 146516 GCTTCAGTGTTTCCCAGTGCTGA-ATATCCTTAGAGAGATCCACCTCCTCAGCCGTCCAG 146574 Query 14391 AAACTAGCGACAGCTTTTTTATACAT 14416 || || | ||||| |||||||| Sbjct 146575 AAGGAGGCCTCTGCTTTCTTATACAT 146600 >seq24704 Length=62651 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||||||||||||||| || ||||| ||||| || ||||| || |||||||| | Sbjct 10249 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCT 10190 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | || | |||| | ||||| || || ||||||| ||||| ||||| || ||||| | Sbjct 10189 TGAGCC-AGATATGGATGCAAAAGAACCAGAAAAGACGATTCCTTCAACAGCTGCAAA-G 10132 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 10131 CTACAACACGTTCACC 10116 Score = 105 bits (116), Expect = 6e-18 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | |||||||| | ||||| || ||||||||||| ||||| ||| Sbjct 14410 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCT 14351 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 |||| ||| ||||| ||||||||||||||||||||| Sbjct 14350 TCCAATGAGATATTCTCCATAAAATCAAATGGATTT 14315 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||| || || |||||||| | |||||||||||||| ||||||||||||||||| || || Sbjct 6756 AATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTG 6697 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 || ||||| || || | |||||| | | |||||||| Sbjct 6696 GAAGCCATAGAAACAGCGAGCTTCAGTCACCTGTACTTC 6658 >seq20505 Length=154428 Score = 104 bits (114), Expect = 2e-17 Identities = 222/324 (69%), Gaps = 22/324 (7%) Strand=Plus/Minus Query 13895 CTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttt 13954 ||||||| |||||| |||||| || ||||| | || ||| || | || || || || Sbjct 146605 CTCATCTTTACTAAGAAGTTCATTGGAAAAAGCTAGTCCAAGCTTTAAATCT---TTCTT 146549 Query 13955 tAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||| ||||| ||||| || | ||||||| |||| ||||| || ||||| | Sbjct 146548 GAGCCAGAATATCAATGCAAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGAC 146492 Query 14015 TATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC-AG 14073 || | | ||| ||| | | || || ||||| | ||| | | ||| || || || Sbjct 146491 TACCACACATTCACCATATGTTGTTTCTTTGTCC-----CCAGT--CCAGCACAGTCCAG 146439 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTT-- 14131 ||| ||||||||| || | |||||| | ||| || | | ||||| | ||||| Sbjct 146438 CTTTCTTTTTAATACAAGGTAGAGTTTCAGTGCTATTGAAGAGAAATTCCATTTCTTTTG 146379 Query 14132 AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14191 ||| || ||| || || |||||||| | ||| ||||||||| ||| ||||||||| Sbjct 146378 AGTCTTT--AATATAAGTGTCAATAAGAAGACTA--CATTTCAGAATGT--GTTTTCCAT 146325 Query 14192 AGCTATCTGAAAACCATAAAAGCA 14215 || || || || ||||| || || Sbjct 146324 AGTAATTTGGAAGCCATAGAAACA 146301 >seq14936 Length=40044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTA--GAAATAACGCCCATTT 13581 |||||||| |||| |||| || ||||| || | ||||| | ||||| | | Sbjct 15737 TAAAAATCTGCATCCAATGTGAAGACATTGTC--CGTTGTTTCTGCCATAACTGCAAAAC 15794 Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 |||||||| || ||||||||||| || || ||||| |||||||| || ||||||| Sbjct 15795 GCTGATATTCTGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATATTTT 15854 Query 13642 CCATAAAATCAAATGGATT 13660 |||| |||||||| ||||| Sbjct 15855 CCATGAAATCAAAGGGATT 15873 >seq58737 Length=50753 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 118937 GGATTACCGGAAGGTAATCATGGATTACATATACATGAGTTTGGTGATGAAACTAATGGT 118996 ||||| | ||||| |||||||||| ||| | ||||||||||||||| | ||| | || Sbjct 14064 GGATTGGCTGAAGGAGATCATGGATTTCATGTCCATGAGTTTGGTGATAACACTCAAGGA 14123 Query 118997 TTTTTGAGTATGGGGAATCATTACAATCCTGAAAATAAAAAACATGGTAGCCCTTTTAAT 119056 | | | ||| || ||| || |||||| | ||||| |||||| | || | || Sbjct 14124 TGTATCAGTGCAGGTGCTCACTATAATCCTCATTCCAAAAAGCATGGTGGACCAGATGAT 14183 Query 119057 AATGAGAGGCATATTGGAGATCTGGGAAATATTTATTCAAACAAATATGG 119106 ||| |||||| ||||||| || || ||| | | || ||||| |||| Sbjct 14184 GTTGAAAGGCATGTTGGAGACCTTGGCAATGTGACTGCAGACAAAGATGG 14233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478062678217400