Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq34511 338 6e-88 seq92824 313 2e-80 seq24704 104 2e-17 seq14936 84.2 2e-11 >seq34511 Length=68903 Score = 338 bits (374), Expect = 6e-88 Identities = 623/901 (69%), Gaps = 23/901 (3%) Strand=Plus/Plus Query 13311 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13370 ||| || || |||| || | |||| ||| || || | || || || ||| || | Sbjct 59389 CTAGAAGTCTGCATCCAAGGTAAAAGAATTCTCAGCTGGACTTGACATCACTCCCGTTCT 59448 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 |||||||| | ||||| || ||||| ||||| ||||| |||||| ||| ||||| || Sbjct 59449 CTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCGATGAGATATTATC 59508 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 ||||||||| ||||||||| || ||| | || | |||||||||| || | | Sbjct 59509 CATAAAATCAAATGGATTTTCTGCTCTAAGAATCTTGCTAAAACCTAGTTCCAACATAAC 59568 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| || || | ||| ||||| || || ||||||| |||||||| || || | || Sbjct 59569 TCTGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTGCAATTCATTCCAATCAACTT 59628 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 13610 |||||| | | ||||||||| || | |||||| ||||| ||| | || | | Sbjct 59629 TACAGGTAAAGCTTCAGTTAAAAACTCCTGTTCTATTTTAACAGCATCGATGAT--TTCT 59686 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 ||| | | || | ||||| | | | ||||| || |||||||| |||||||| Sbjct 59687 TTTACTTTT-TCTTCTGAAGGCTTGTGTACCATGTGTTTGAACATTAAACAGGCAAAATC 59745 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 ||| || | ||||||||||||||||||||||| || ||||| |||||||| ||||| || Sbjct 59746 ACAGTGCAAACCCTCATCTCTACTAATAAGTTCCTTGGAAAAAGTTAATCCAGGCATTAA 59805 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 ||| ||| |||| ||| ||||| | || || || || |||| ||| ||||| ||||| Sbjct 59806 GTCTCATTTCTTTAGCCAGAATATGGATGCAAAAGAACCAGAAAGGAAGATTCCTTCAAC 59865 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 || ||||| |||| || || ||| | | ||| | | ||| |||||| Sbjct 59866 AGCTGCAAAAGCTACAAGACG----CCATATGTTGCCTCTCTGTCCCCAATCCATCGCAA 59921 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA-AATGTT 13909 ||||| |||| ||| ||||||| | || | |||| | |||||||| | || | Sbjct 59922 CGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGCATTTCAAAGGCATTGAAGAGAAATTC 59981 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 |||| | | || ||| ||| || || |||||||| | |||||||||||| |||| Sbjct 59982 CCTTTTTTGGGGTCCTT--AATATAAGTGTCAATAAGGAGACTATACATTTCAACATGTA 60039 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACCTC 14027 ||||||| ||||| || || || ||| ||| | | |||||| |||| ||||| || Sbjct 60040 TGTTTTCCATAGCAATTTGGAAGCCAGAAACA-GGCGAGCTTCAGCGACC--TGTACTTC 60096 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 | || || |||| ||||||||||| || |||||||| |||||||| || || Sbjct 60097 TTGGCTGAACTGCTCCACCAAATTTTCATTAACTATGCCATCACTTGCTGCAAAGAAAGC 60156 Query 14088 CAATATGTTTTTAATAAAGTATTGCTCTTCATTG--TTGAGTTTTTTCCAATCGGCT--A 14143 || | | || ||||||| ||||| | | || ||| ||| ||| | ||| | Sbjct 60157 TAACACATGAGATATGAAGTATT--TCTTCTTAGACTTCAGTGTTTCCCAGT--GCTGAA 60212 Query 14144 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACA 14203 ||||||||| ||||| || || ||| |||||| || || ||||| ||||||| Sbjct 60213 TATCCTTAGAGAGATCCACCTCCTCAGTTGTCCAGAAGGAGGCCTTTGCTTTCTTATACA 60272 Query 14204 T 14204 | Sbjct 60273 T 60273 >seq92824 Length=186084 Score = 313 bits (346), Expect = 2e-80 Identities = 412/567 (73%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 13701 || ||||| || |||||||| ||||||||||| || | ||||||||||||||||||||| Sbjct 146038 AGGTGTTTGAACATTAAACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTAATAAGT 146097 Query 13702 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 13761 || || ||||| ||||| || ||||| || |||||||| || | ||| ||||| | || Sbjct 146098 TCATTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCA 146157 Query 13762 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAAC 13821 || || || |||||||| ||||| ||||| || ||||| |||| | ||||| ||| | Sbjct 146158 AAAGAACCAGAAAAGAAGATTCCTTCAACAGCCGCAAAAGCTACAACACGTTCACCATAT 146217 Query 13822 GATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCC 13881 | ||||| | ||| ||||| ||||| |||| ||| ||||||| | || | Sbjct 146218 GTTGCTTCTCTGTCCCCAATCCACCGCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGC 146277 Query 13882 ATTGTTTCGATTGCATTGA--ATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTAT 13939 | ||||| || ||||||| | |||| || |||| | || ||| ||| || || | Sbjct 146278 AGCGTTTCAATGGCATTGAAGAGAAATTCTCTTTCTTTGGGGTCCTT--AATATAAGTGT 146335 Query 13940 CAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAA 13999 ||||||| | |||||||||||||| ||||||||||| ||||| || || || ||||| | Sbjct 146336 CAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGA 146395 Query 14000 AACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAA 14059 |||| | |||||| | | ||||| || | || | || |||| |||||||| | Sbjct 146396 AACAGCGAGCTTCAGTCACCTGTACTTCTTGGCTGAACCGCTCCACCAAATTTTCATTTA 146455 Query 14060 CAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT 14119 | || |||||||| |||||||| || || || || || ||||||| ||| ||| Sbjct 146456 CTATGCCATCACTTGCTGCAAAGAAAGCTAACTCGTGAGATATGAAGTATTTCTCCTCAG 146515 Query 14120 TGTTGAGTTTTTTCCAATCGGCT--AAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177 || ||| ||| ||| | ||| | ||||||||| ||||| || || ||| | ||||| Sbjct 146516 GCTTCAGTGTTTCCCAGT--GCTGAATATCCTTAGAGAGATCCACCTCCTCAGCCGTCCA 146573 Query 14178 AAAACTAGCGACAGCTTTTTTATACAT 14204 || || | ||||| |||||||| Sbjct 146574 GAAGGAGGCCTCTGCTTTCTTATACAT 146600 >seq24704 Length=62651 Score = 104 bits (114), Expect = 2e-17 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||||||||||||||| || ||||| ||||| || ||||| || |||||||| | Sbjct 10249 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCT 10190 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | || | |||| | || || || || ||||||| ||||| ||||| || ||||| | Sbjct 10189 TGAGCC-AGATATGGATGCAAAAGAACCAGAAAAGACGATTCCTTCAACAGCTGCAAA-G 10132 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 10131 CTACAACACGTTCACC 10116 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | |||||||| | ||||| || ||||| ||||| ||||| ||| Sbjct 14410 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCT 14351 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 |||| ||| ||||| ||||||||||| ||||||||| Sbjct 14350 TCCAATGAGATATTCTCCATAAAATCAAATGGATTT 14315 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||| || || |||||||| | |||||||||||||| ||||||||||| ||||| || || Sbjct 6756 AATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTG 6697 Query 13989 AAAACCATAAAAACATCTAGCTTC 14012 || ||||| ||||| | |||||| Sbjct 6696 GAAGCCATAGAAACAGCGAGCTTC 6673 >seq14936 Length=40044 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTA--GAAATAACGCCCATTT 13369 |||||||| |||| |||| || ||||| || | ||||| | ||||| | | Sbjct 15737 TAAAAATCTGCATCCAATGTGAAGACATTGTC--CGTTGTTTCTGCCATAACTGCAAAAC 15794 Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 |||||||| || |||||||||||||| || ||||| |||||||| || ||||||| Sbjct 15795 GCTGATATTCTGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATATTTT 15854 Query 13430 CCATAAAATCGAATGGATT 13448 |||| ||||| || ||||| Sbjct 15855 CCATGAAATCAAAGGGATT 15873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476927432822040