Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq92824 370 1e-97 seq34511 365 6e-96 seq19303 111 2e-19 seq24704 104 3e-17 seq100634 102 1e-16 >seq92824 Length=186084 Score = 370 bits (410), Expect = 1e-97 Identities = 442/599 (74%), Gaps = 3/599 (1%) Strand=Plus/Plus Query 42050 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCG 42109 ||||| ||||| ||||| || ||||| ||||||| |||||||||||||||||| | ||| Sbjct 146041 TGTTTGAACATTAAACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTAATAAGTTCA 146100 Query 42110 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAAT 42169 |||||||| || | || ||||||| || || || || ||||| ||||| || ||||| Sbjct 146101 TTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCAAAA 146160 Query 42170 GATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 42229 || |||||||||||||||||||| || |||||||| || | || | || ||||| Sbjct 146161 GAACCAGAAAAGAAGATTCCTTCAACAGCCGCAAAAGCTACAACACGTTCACCATATGTT 146220 Query 42230 GCA---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATC 42286 || ||||| |||||| ||||| || || |||||||| |||||||||| | Sbjct 146221 GCTTCTCTGTCCCCAATCCACCGCAAGGCCCAGTCAGCTTTCTTTTTAACACAAGGCAGC 146280 Query 42287 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATC 42346 ||||| |||||||| |||||| | | | |||| || || |||| ||| || || || Sbjct 146281 GTTTCAATGGCATTGAAGAGAAATTCTCTTTCTTTGGGGTCCTTAATATAAGTGTCAATA 146340 Query 42347 AAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406 | |||||||||||||| ||||| |||||||| || || || || || || |||||||| Sbjct 146341 AGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAG 146400 Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466 | || || || |||||||||||| | || || || | |||||||| || ||||| Sbjct 146401 CGAGCTTCAGTCACCTGTACTTCTTGGCTGAACCGCTCCACCAAATTTTCATTTACTATG 146460 Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT 42526 || ||||| |||||||| || || || | || ||| || ||||| || || || | Sbjct 146461 CCATCACTTGCTGCAAAGAAAGCTAACTCGTGAGATATGAAGTATTTCTCCTCAGGCTTC 146520 Query 42527 AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 | | | | ||| | | ||||| ||||| | ||| || || || ||||||| || || Sbjct 146521 AGTGTTTCCCAGTGCTGAATATCCTTAGAGAGATCCACCTCCTCAGCCGTCCAGAAGGAG 146580 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || ||||| || |||||||| | ||| || ||||| || ||||| ||||| || || || Sbjct 146581 GCCTCTGCTTTCTTATACATGTGCCAAATGTCATGGTACTGAATGGGGAAGATGACGAA 146639 >seq34511 Length=68903 Score = 365 bits (404), Expect = 6e-96 Identities = 653/945 (69%), Gaps = 15/945 (2%) Strand=Plus/Plus Query 41707 ATTTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACAT 41763 |||| ||| | || ||||| |||| || | |||| ||| || || || ||||| Sbjct 59377 ATTTCAGTTCATCTAGAAGTCTGCATCCAAGGTAAAAGAATTCTCAGCTGGACTTGACAT 59436 Query 41764 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAA 41823 |||||| || | || ||||| || || | || || || || || || || |||||| | Sbjct 59437 CACTCCCGTTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCGA 59496 Query 41824 TGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA 41883 ||| ||||| ||||| |||||||| ||||| | || ||| || |||| || | Sbjct 59497 TGAGATATTATCCATAAAATCAAATGGATTTTCTGCTCTAAGAATCTTGCTAAAACCTAG 59556 Query 41884 TTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCAT 41943 ||| | || | ||| ||||| | ||||| || || ||||| | |||||||| Sbjct 59557 TTCCAACATAACTCTGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTGCAATTCAT 59616 Query 41944 TCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTC 42003 ||| || | || || || | ||| |||| | ||| || ||||| || || || || Sbjct 59617 TCCAATCAACTTTACAGGTAAAGCTTCAGTTAAAAACTCCTGTTCTATTTTAACAGCATC 59676 Query 42004 TGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATC 42061 || || | ||||| ||||||| || || ||| || ||||| ||||| Sbjct 59677 G---ATGATTTCTTTTACTTTTTCTTCTGAAGGCTTGTGTACCATG--TGTTTGAACATT 59731 Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTG 42121 ||||| || ||||| ||||||| |||||||||||||||||| | ||| |||||||| || Sbjct 59732 AAACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTAATAAGTTCCTTGGAAAAAGTT 59791 Query 42122 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAG 42181 | ||| ||||||| | | | || || ||||| ||||| || ||||| || ||||||| | Sbjct 59792 AATCCAGGCATTAAGTCTCATTTCTTTAGCCAGAATATGGATGCAAAAGAACCAGAAAGG 59851 Query 42182 AAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT 42241 ||||||||||| || || ||||| || | ||| | | | | || | ||||| Sbjct 59852 AAGATTCCTTCAACAGCTGCAAAAGCTACAAGACGCCATATGTTGCC-TCTCTGTCCCCA 59910 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| ||||| || || |||||||| |||||||| | | |||| | |||||| Sbjct 59911 ATCCATCGCAACGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGCATTTCAAAGGCATTG 59970 Query 42302 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATT 42361 |||||| | || || || || |||| ||| || || || | |||||||||||| Sbjct 59971 AAGAGA-AATTCCCTTTTTTGGGGTCCTTAATATAAGTGTCAATAAGGAGACTATACATT 60029 Query 42362 TCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA-TCTGGCCTCGGTAAC 42420 || ||| |||||||| || || || || || || ||||||| | || || | || Sbjct 60030 TCAACATGTATGTTTTCCATAGCAATTTGGAAGCC--AGAAACAGGCGAGCTTCAGCGAC 60087 Query 42421 CTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGC 42480 |||||||||| | || | || | |||||||| || ||||| || ||||| ||||| Sbjct 60088 CTGTACTTCTTGGCTGAACTGCTCCACCAAATTTTCATTAACTATGCCATCACTTGCTGC 60147 Query 42481 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATC 42540 ||| || || || ||||| ||| || ||||| | | | | | | | | ||| | Sbjct 60148 AAAGAAAGCTAACACATGAGATATGAAGTATTTCTTCTTAGACTTCAGTGTTTCCCAGTG 60207 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 | ||||| ||||| | ||| || || || ||||| || || || | ||| || || Sbjct 60208 CTGAATATCCTTAGAGAGATCCACCTCCTCAGTTGTCCAGAAGGAGGCCTTTGCTTTCTT 60267 Query 42601 ATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 |||||| | ||| |||||||| || ||||| ||||| |||||||| Sbjct 60268 ATACATGTGCCAAATATCATGGTACTGAATGGGGAAGATAACAAA 60312 >seq19303 Length=70460 Score = 111 bits (122), Expect = 2e-19 Identities = 239/355 (67%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 39799 CCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTCC 39858 |||||||| ||||| |||| ||||| | || || ||||| ||| || ||||| Sbjct 43172 CCAGTTGAACCAAAACCTTCTGCTCCACGTTCAGTGTCATCTAAGCCTTGGACCTCTTCA 43113 Query 39859 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTACA 39918 |||||||||||| | | |||| | | || ||||| || || | || ||| | || || Sbjct 43112 AGTTCTGGATAAAAAACCCGTTCACAAATCAGCTGGGCAATCCGGTCACCCTTTTTCACT 43053 Query 39919 TTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCG 39978 | || || ||| ||| |||| || | || || | |||||||| |||||||| Sbjct 43052 TCAAATGTTTCTTTGCCAAAGTTAAAGAGTACAACACCAACATTTCCCCTGTAATCTTCA 42993 Query 39979 TCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAGCT 40035 ||||| ||||| |||| | ||| || | |||| | || ||||| | ||||| Sbjct 42992 TCTATGACACCAGCTCCCACATCTATGAAATGTTTTGCAGCCAAGCCAGAACGTGGAGCA 42933 Query 40036 ATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGTCTT 40095 | ||||||||| || ||| | ||||| ||| |||||||| | | || ||| Sbjct 42932 ACTCTACCATAACACCCAGGAGGGAGAGACATCTGAATGTCTGTCTTCA--CAATGGCTT 42875 Query 40096 TCTCC--CGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCAGCGGC 40148 ||||| | || || ||| |||| || || || |||| || || || ||||| Sbjct 42874 TCTCCATGGCTGGTATTGTACAATCATAGGCACTGTACAGGTCGTAGCCCGCGGC 42820 >seq24704 Length=62651 Score = 104 bits (114), Expect = 3e-17 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||||||||| | ||| |||||||| || | || ||||||| || || || | Sbjct 10249 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCT 10190 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 | |||| | |||| || ||||| || |||||||||| ||||||||| || || |||||| Sbjct 10189 TGAGCC-AGATATGGATGCAAAAGAACCAGAAAAGACGATTCCTTCAACAGCTGCAAAG 10132 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || |||| ||| || || || | |||||||||||||| ||||| |||||||| || || Sbjct 6761 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 6702 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || || || || |||||||| | || || || |||||||||||| Sbjct 6701 ATTTGGAAGCCATAGAAACAGCGAGCTTCAGTCACCTGTACTTCT 6657 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 41720 TAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTT 41776 || ||||| |||| || | |||| ||| || | || ||||| ||||||||| | Sbjct 14452 TAGAAGTCTGCATCCAAGGTAAAAGAATTCTCAGTTGGACTTGACATCACTCCCATTCTC 14393 Query 41777 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCC 41836 || ||||| || || | || || || || || || || ||||||||||| ||||| ||| Sbjct 14392 TGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCAATGAGATATTCTCC 14333 Query 41837 ATGAAATCAAACGGATT 41853 || |||||||| ||||| Sbjct 14332 ATAAAATCAAATGGATT 14316 >seq100634 Length=30925 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| |||| || || ||||| ||||| || ||||| || ||||| | Sbjct 3504 ACCTGAAATTCTCCTGACAGGACCCTCCGAGTATAAATGTTGCTGGTGTAAGGTTCGATG 3563 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || |||||||| || ||||| |||||||| || ||||| ||||| || || | || | | Sbjct 3564 GATTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAA 3623 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | |||| Sbjct 3624 CTGTTTCTGATTCCAT 3639 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || ||||||||||||||||| || ||||| || || | ||| ||||| |||| || ||| Sbjct 12750 ACACGTTTCATAAAGAGATCCGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 12809 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || || || ||||| || || || ||||| | | ||||| | ||||| || Sbjct 12810 TCTTCCTTCCCAGTGTTCTTCTTCAGGTCAAGGAATTCAAAGATATCTAAGTGCCATGGC 12869 Query 72142 TCCAAGTATATGGC 72155 |||||||| ||||| Sbjct 12870 TCCAAGTAGATGGC 12883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668809415770360