Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq8739 113 5e-20 seq100566 107 2e-18 seq62487 98.7 1e-15 seq63886 86.0 6e-12 >seq8739 Length=53120 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || |||| || || || | || |||||||| || |||||||| || | Sbjct 865 CCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAC 806 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| || || || |||||| ||||||| | |||||||| || || Sbjct 805 AGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 746 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| ||| || | | || | ||||| |||| |||||| Sbjct 745 ATGCCTTCTTTGTCTTGAATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 686 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| ||||| || || || || || ||||| Sbjct 685 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 639 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || | |||| ||||| || || || ||| Sbjct 379 GTGGATTCTTTCTGGATGTTGTAGTCAGATAGGGTGCGACCATCTTCCAGCTGCTTTCCA 320 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | ||||| || || || |||||||||||||| || ||| || Sbjct 319 GCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTC 260 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| || ||||||| || | |||||||| ||||| || Sbjct 259 ACGTTCTCAATGGTGTCACTGGGCTCCACTTCAAGGGTGATGGTCTTGCCAGTCAAGGTC 200 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 199 TTCACGAAAATCTGCAT 183 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || |||||||| || | |||| ||||| || || || || Sbjct 607 GTGGATTCTTTCTGGATGTTGTAGTCAGATAGGGTGCGACCATCTTCCAGCTGCTTCCCG 548 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||||| || || || |||||||||||||| || ||| || Sbjct 547 GCAAAGATCAGTCTCTGCTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTC 488 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| |||||||||| || | |||||||| ||||| || Sbjct 487 ACGTTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTGCCAGTCAAGGTC 428 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 427 TTCACAAAGATCTGCAT 411 >seq100566 Length=62511 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| || || || || | || |||||||| || |||||||| || Sbjct 20732 CCACCTCTGAGACGAAAGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAT 20791 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || |||||| |||||| | |||||||| || || Sbjct 20792 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 20851 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| ||| ||| | | || | ||||| |||| |||||| Sbjct 20852 ATGCCTTCTTTGTCTTGAATCTTTGCTTTCACATTCTCAATGGTGTCACTGGGCTCTACT 20911 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| ||||| || || || || || ||||| Sbjct 20912 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 20958 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | || || |||| || |||||||| || |||||||| || | Sbjct 20504 CCACCTCTGAGACGAAGGACCAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAC 20563 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| || || || |||||| |||||| | ||||| || || || Sbjct 20564 AGGGTACGCCCATCTTCTAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 20623 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || ||| || | | || | ||||| |||| |||||| Sbjct 20624 ATGCCTTCTTTGTCTTGGATCTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCTACT 20683 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | |||||||| ||||| || || || || || ||||| Sbjct 20684 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 20730 >seq62487 Length=10509 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 142959 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCA 143018 |||||| ||| ||| || || || | || ||||||||||| ||||| || || || Sbjct 5850 CTCCTC--AAATGCAGGACCAAGTGCAGGGTGGATTCTTTTTGGATGTTCTAGTCAGACA 5793 Query 143019 TTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTA 143078 || | ||||| || || || |||||| ||||||| | ||||| || || || | Sbjct 5792 GGGTATGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGGA 5733 Query 143079 TGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTT 143138 ||||||||||||| || ||| || | | || | ||||| |||| ||||||| Sbjct 5732 TGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTT 5673 Query 143139 CAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| || | |||||||| ||||| || || || || || ||||| Sbjct 5672 CAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5627 >seq63886 Length=20840 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 142993 TTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATA 143052 ||||||||| ||||||||||| || || ||| ||||| || || || |||||| | Sbjct 20215 TTCTTTTTGGATGTTGTAATCAGACAAGGTACTCTCATCTTCTAGCTGCTTTCCAGCAAA 20156 Query 143053 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG 143112 ||||| | ||||| || | || |||||||||||||| || ||| || | Sbjct 20155 GATCAACCTCTGCTGTTCTGAGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACACT 20096 Query 143113 TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 143172 |||| ||||| ||||||| ||||||| || | || | ||| ||||| || || || Sbjct 20095 CTCCATGGTGTCACTGGGTTCCACTTCAAGGGTGATGGTTTAGCCAGTCAAGGTCTTCAC 20036 Query 143173 GAATATTTGCAT 143184 || || | ||| Sbjct 20035 AAAAATCTACAT 20024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505254356549520