Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5191 98.7 7e-16 seq63886 93.3 3e-14 seq100566 89.7 4e-13 seq4507 82.4 6e-11 >seq5191 Length=73165 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||||| || ||||| ||||| ||||| | | | | | ||||||| || Sbjct 37778 ATGAAGGGTGGTCTCCTTTTGAATGTTATAATCAGCCAAAGTACATCCTTCTTCTAGCTG 37719 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| || | ||||| | |||||| || ||||| |||||||| || ||| || Sbjct 37718 TTTGCCTGCAAACATCAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATCTT 37659 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| | ||| || ||||| ||| ||||| | ||| |||||||| ||| | Sbjct 37658 GGCCTTGATCGATTCAATTGTATCAGACAATTCCACATCAAGGGTGATGGTTTTCCCTAT 37599 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||| || ||||| || ||||| Sbjct 37598 CAGAGTCTTCACAAATATCTGCAT 37575 >seq63886 Length=20840 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | || || ||||| |||||| |||||||| ||||||||||| Sbjct 20250 CCTCCCCTCAAGCGTAGGACCAAATGCAGGGTGTTTTCTTTTTGGATGTTGTAATCAGAC 20191 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | ||| | ||||||| || || ||||| | ||||| | || || || || Sbjct 20190 AAGGTACTCTCATCTTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGTTCTGAGGGG 20131 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| || ||||| ||| ||| | || ||||| || || ||| || Sbjct 20130 ATGCCTTCTTTGTCTTGGATCTTTGC-CTTGACACTCTCCATGGTGTCACTGGGTTCCAC 20072 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||||| || |||| || || |||||||| | ||| Sbjct 20071 TTCAAGGGTGATGGTTTAGCCAGTCAAGGTCTTCACAAAAATCTACAT 20024 >seq100566 Length=62511 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | || || || || |||||||| ||||| || |||||||| || | Sbjct 20732 CCACCTCTGAGACGAAAGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAT 20791 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || || ||||| | ||||| | || || || || Sbjct 20792 AGGGTGCGACCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 20851 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||| |||||| || ||| | || ||||| || || ||||| Sbjct 20852 ATGCCTTCTTTGTCTTGAATCTTTGCT-TTCACATTCTCAATGGTGTCACTGGGCTCTAC 20910 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || |||| || || ||||| || ||||| Sbjct 20911 TTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 20958 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | || || ||||| || || ||||| || |||||||| || Sbjct 20504 CCACCTCTGAGACGAAGGACCAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCAGAC 20563 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | | ||||||| || || ||||| | ||||| | || ||||| || Sbjct 20564 AGGGTACGCCCATCTTCTAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 20623 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| || ||||| ||| ||| | || ||||| || || ||||| Sbjct 20624 ATGCCTTCTTTGTCTTGGATCTTTGC-CTTCACATTCTCAATGGTGTCACTGGGCTCTAC 20682 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || |||| || || ||||| || ||||| Sbjct 20683 TTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 20730 >seq4507 Length=158405 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | || | |||||||||||| ||||| || |||||||| || Sbjct 141322 CCACCTCTAAGACGCAGGACCAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 141381 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || ||||| || | |||| | || ||||| || Sbjct 141382 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 141441 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || |||||| ||| ||| | || ||||| || || || || Sbjct 141442 ATGCCCTCTTTATCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 141501 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| ||||| || |||||||| || || ||||| || |||||| Sbjct 141502 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATA 141549 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | || | |||||||||||| ||||| || |||||||| || Sbjct 141778 CCACCTCTAAGACGCAGGACCAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 141837 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || ||||| || | |||| | || ||||| || Sbjct 141838 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 141897 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || |||||| ||| ||| | || ||||| || || || || Sbjct 141898 ATGCCCTCTTTATCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 141957 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| ||||| || |||||||| || || ||||| || |||||| Sbjct 141958 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATA 142005 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| | | | || | |||||||||||| ||||| || |||||||| || Sbjct 142006 CCACCTCTAAGACGCAGGACCAGATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 142065 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || ||||| || | |||| | || ||||| || Sbjct 142066 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 142125 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || ||||| || |||||| ||| ||| | || ||||| || || || || Sbjct 142126 ATGCCCTCTTTATCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 142185 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||| ||||| || |||||||| || || ||||| || |||||| Sbjct 142186 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATA 142233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360953367261051