Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq5191 93.3 3e-14 seq63886 91.5 1e-13 seq8739 82.4 5e-11 seq1300 82.4 5e-11 >seq5191 Length=73165 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| |||| |||||||| |||||||| || || | || || | || Sbjct 37778 ATGAAGGGTGGTCTCCTTTTGAATGTTATAATCAGCCAAAGTACATCCTTCTTCTAGCTG 37719 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||| |||||||| ||||| | ||| || || |||| | |||||||||||| ||| || Sbjct 37718 TTTGCCTGCAAACATCAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCCTGAATCTT 37659 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 |||| | ||| ||||| | | |||||||| | || || ||||| || | Sbjct 37658 GGCCTTGATCGATTCAATTGTATCAGACAATTCCACATCAAGGGTGATGGTTTTCCCTAT 37599 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 | ||||||||||||||| ||||| Sbjct 37598 CAGAGTCTTCACAAATATCTGCAT 37575 >seq63886 Length=20840 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| | || |||||||| || ||| | |||||||| || || ||||| Sbjct 20251 ACCTCCCCTCAAGCGTAGGACCAAATGCAGGGTGTTTTCTTTTTGGATGTTGTAATCAGA 20192 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || |||||| || | || ||||| ||||| ||||||| ||||| || ||||| Sbjct 20191 CAAGGTACTCTCATCTTCTAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGTTC-TGAGG 20133 Query 44014 T-ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | |||||||| ||| || ||| ||||| | | | || || || |||| Sbjct 20132 GGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACACTCTCCATGGTGTCACTGGGTTCCA 20073 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || |||| || || || ||||||||||| || | ||| Sbjct 20072 CTTCAAGGGTGATGGTTTAGCCAGTCAAGGTCTTCACAAAAATCTACAT 20024 >seq8739 Length=53120 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| ||||| | | ||||| || || ||| ||||| || || || || || Sbjct 866 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGA 807 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | |||| |||| |||| || ||||| ||||| |||| || ||||| ||| | || Sbjct 806 CAGGGTACGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCCGGGGG 747 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| ||| ||||| | ||| || || ||||| || Sbjct 746 GATGCCTTCTTTGTCTTGAATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 687 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || || || || ||||||||||| || ||||| Sbjct 686 TTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 639 >seq1300 Length=25519 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 43914 CCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCA 43973 ||| ||| || || |||||| |||||||||||||| || ||| | || |||| Sbjct 24764 CCAGATGAAGGGTAGACTCTTTCTGAATATTATAATCAGCCAAAGTACGTCCTTCTTCCA 24823 Query 43974 ATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAA 44033 | || || | ||| | ||| | ||| || || |||| | |||||| |||||| || Sbjct 24824 GCTCCTTGCCAGAAAACACCAATCTTTGATGATCAGGAGGAATACCTTCCTTATCTTGAA 24883 Query 44034 TTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTAC 44093 | || ||||| | ||| ||||| | |||||||| | || || ||||| | Sbjct 24884 TCTTGGCCTTGACTGTTTCAATTGTATCAGATAATTCCACATCAAGGGTGATGGTTTTCC 24943 Query 44094 CGGTTAAAGTCTTCACAAATATTTGCAT 44121 | | ||||||||||||||||| ||||| Sbjct 24944 CCATCAAAGTCTTCACAAATATCTGCAT 24971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353576818737228