Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq34511 309 3e-79 seq92824 266 3e-66 seq14936 96.9 3e-15 seq24704 95.1 1e-14 >seq34511 Length=68903 Score = 309 bits (342), Expect = 3e-79 Identities = 612/894 (68%), Gaps = 19/894 (2%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || | || | |||||||| | ||||| || ||||| ||||| ||||| | Sbjct 59430 TTGACATCACTCCCGTTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCC 59489 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT-TA 12961 |||| | || ||||| ||||||||||| || ||||||| | | | || || || || Sbjct 59490 CTTCCGATGAGATATTATCCATAAAATCAAATGGATTTTCTGCTCTA-AGAATCTTGCTA 59548 Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 | |||| ||| | | | |||||| || ||||| || |||||||| ||||||||| Sbjct 59549 AAACCTAGTTCCAACATAACTCTGTCTGCTACAAATTCAATGTACTGCTTCATTAAAGTG 59608 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 || |||||||| || || |||||||| | |||||| |||||||| | | |||||| | | Sbjct 59609 CAATTCATTCCAATCAACTTTACAGGTAAAGCTTCAGTTAAAAACTCCTGTTCTATTTTA 59668 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGA---TGC 13138 || || ||||| | | |||| |||| || ||| || ||| || || || Sbjct 59669 ACAGCATCGATGATT-----TCTT-TTACTTTTTCTTCTGAAGGCTTGTGTACCATGTGT 59722 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || ||||| | ||| ||||||||||||||||| || ||||||||||| || || || || Sbjct 59723 TTGAACATTAAACAGGCAAAATCACAGTGCAAACCCTCATCTCTACTAATAAGTTCCTTG 59782 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 ||||| |||| || ||||| | ||| ||| || | ||| ||||| | ||||| ||| Sbjct 59783 GAAAAAGTTAATCCAGGCATTAAGTCTCATTTCTTTAGCCAGAATATGGATGCAAAAGAA 59842 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318 || |||| || ||||||||||| |||||||| |||| ||| | ||||| || Sbjct 59843 CCAGAAAGGAAGATTCCTTCAACAGCTGCAAAAGCTA-CAA---GACGCCATATGTTGCC 59898 Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | | | | | ||||| ||||||| ||||| | |||||| || | || Sbjct 59899 TCTCTGTCCCCAATCCATCGCAACGCCCAGTCAGCTTTCTTTTTAACACAAGGTAGCATT 59958 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 || | || || || | | |||| || || ||| ||||||||| || || | Sbjct 59959 TCAAAGGCATTGAAGAGA-AATTCCCTTTTTTGGGGTCCTTAATATAAGTGTCAATAAGG 60017 Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 | ||||||||||| ||| || |||||||| || |||||||| ||| ||| | | | Sbjct 60018 AGACTATACATTTCAACATGTATGTTTTCCATAGCAATTTGGAAGCCAGAAACA-GGCGA 60076 Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 || || | ||||| ||||| | || || | || ||||| |||||||| || Sbjct 60077 GCTTCAGCGACCTGTACTTCTTGGCTGAACTGCTCCACCAAATTTTCATTAACTATGCCA 60136 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTG-CTTAATAAAttttttttCGTTTTCTGACAA 13617 ||||| || ||||| ||||| | | || || || | ||| ||| | || || Sbjct 60137 TCACTTGCTGCAAAGAAAGCTAACACATGAGATATGAAGTATTTCTTCTTAGACT-TCAG 60195 Query 13618 CTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 || ||| | ||| ||| || || | ||| ||||||||| ||||| || || || Sbjct 60196 TGTTTCCCAGTGCTGAATATCCTTAGAGAGATCCACCTCCTCAGTTGTCCAGAAGGAGGC 60255 Query 13678 AACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 || ||||||||||| ||| ||||| | || |||||| || | ||| Sbjct 60256 CTTTGCTTTCTTATACATGTGCCAAATATCATGGTACTGAATGGGGAAGATAAC 60309 >seq92824 Length=186084 Score = 266 bits (294), Expect = 3e-66 Identities = 456/656 (70%), Gaps = 8/656 (1%) Strand=Plus/Plus Query 13044 CAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTC 13103 |||||| |||||| || ||||| | | |||||| ||| || | ||| | || || | Sbjct 145949 CAGGCAAAGCTTCAGTCAAAAATTCCTGTTCTATTCTAACAGCATTGATGATAATTTC-C 146007 Query 13104 TTATTACGTTCTCTAATGGAGGATTTGATA---GATGCTTAAACATCATACATGCAAAAT 13160 || ||| || ||| || ||| || || | || || ||||| | ||| ||||||| Sbjct 146008 TT--TACTTTTTCTGCTGAAGGCTTGTGTACCAGGTGTTTGAACATTAAACAGGCAAAAT 146065 Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220 |||||||||| || ||||||||||| || || || || ||||| |||| || ||||| | Sbjct 146066 CACAGTGCAAACCCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTA 146125 Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280 |||||||| || | ||| ||||| | ||||| ||||| ||||| || |||||||||| Sbjct 146126 AACCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAA 146185 Query 13281 CTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTT 13339 | || ||||| |||| |||| | ||||||||| || | | | | | |||||| Sbjct 146186 CAGCCGCAAAAGCTA-CAACACGTTCACCATATGTTGCTTCTCTGTCCCCAATCCACCGC 146244 Query 13340 CTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAA 13399 |||||||| ||||| | |||||| || || |||| || || || || | | | Sbjct 146245 AAGGCCCAGTCAGCTTTCTTTTTAACACAAGGCAGCGTTTCAATGGCATTGAAGAGAAAT 146304 Query 13400 tttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGA 13459 | | |||| || ||| ||||||||| || || | | ||||||||||| ||||| Sbjct 146305 TCTCTTTCTTTGGGGTCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGT 146364 Query 13460 ATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCG 13519 || |||||||| || |||||||| ||||| ||||| | ||| || | ||||| ||||| Sbjct 146365 ATGTTTTCCATAGCAATTTGGAAGCCATAGAAACAGCGAGCTTCAGTCACCTGTACTTCT 146424 Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCA 13579 | || | || | || ||||| || ||||| || ||||| || ||||| ||||| Sbjct 146425 TGGCTGAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCT 146484 Query 13580 AGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCT 13639 | ||| || || | ||| || | || || ||| | ||| ||| Sbjct 146485 AACTCGTGAGATATGAAGTATTTCTCCTCAGGCTTCAGTGTTTCCCAGTGCTGAATATCC 146544 Query 13640 TTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 || || | ||| ||||||||| | ||||| || || || | || ||||||||||| Sbjct 146545 TTAGAGAGATCCACCTCCTCAGCCGTCCAGAAGGAGGCCTCTGCTTTCTTATACAT 146600 >seq14936 Length=40044 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || ||||| |||||||| |||| || ||| Sbjct 20548 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGACCAGGCATAAGACCTCTCTTCTTA 20607 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAA 13290 | ||| |||||||||||||| || ||||| || || || ||||| || || ||||| Sbjct 20608 AGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAA 20663 >seq24704 Length=62651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/135 (78%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || ||||| |||| || ||||| | |||||||| || Sbjct 10247 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTAAACCTCGTTTCTTG 10188 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | || | |||| | ||||| ||||| ||||| | ||||||||||| |||||||| ||| Sbjct 10187 AGCC-AGATATGGATGCAAAAGAACCAGAAAAGACGATTCCTTCAACAGCTGCAAA-GCT 10130 Query 13295 ATCAAC-CTTTCACC 13308 | |||| | |||||| Sbjct 10129 A-CAACACGTTCACC 10116 Score = 89.7 bits (98), Expect = 4e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || |||| | |||||||| | ||||| || ||||| ||||| ||||| | Sbjct 14412 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCC 14353 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 |||| || || ||||| ||||||||||| || ||||||| Sbjct 14352 CTTCCAATGAGATATTCTCCATAAAATCAAATGGATTTT 14314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||||||||| || || | | ||||||||||| ||||| || |||||||| || ||||| Sbjct 6756 AATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTG 6697 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | ||| || | ||||| ||||| Sbjct 6696 GAAGCCATAGAAACAGCGAGCTTCAGTCACCTGTACTTC 6658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429523695756822