Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq92824 123 5e-23 seq100634 100 5e-16 seq14936 86.0 1e-11 >seq92824 Length=186084 Score = 123 bits (136), Expect = 5e-23 Identities = 377/574 (66%), Gaps = 18/574 (3%) Strand=Plus/Minus Query 42289 AGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGG 42348 || |||| ||||| ||| |||||| ||||| || || |||| |||||| || |||| Sbjct 146620 AGTACCATGACATTTGGCACATGTATAAGAAAGCAGAGGCCTCCTTCTGGACGGCTGAGG 146561 Query 42349 AGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACGAAAA 42403 || | || || | ||||| | | || |||||| ||||| ||||| | |||| Sbjct 146560 AGGTGGATCTCTCTAAGGATATTCAGCA--CTGGGAAACACTGAAGCCTGAGGA-GAAA- 146505 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 | ||| | || | || ||||| || || ||| |||||||| ||||| || Sbjct 146504 -TACTTCATATCTCACGAGTTAGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAA 146446 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 ||| |||||| |||| || ||| ||| || ||||| ||||| ||||| Sbjct 146445 TTTGGTGGAGCGGTTCAGCCAAGAAGTACAGGTGACTGAAGCTCGCTGTTTCTATGGCTT 146386 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTA 42580 ||| || || || || ||| | || ||||| |||| | || || | |||| || Sbjct 146385 CCAAATTGCTATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTA 146329 Query 42581 CATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCAT 42640 || ||| ||| || | | || ||||| ||||| || ||| |||| || | Sbjct 146328 TATTAAGGACCCCAAAGAAAGAGAATTTCTCTTCAATGCCATTGAAACGCTGCCTTGTGT 146269 Query 42641 CAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGA 42700 || ||||| || |||||||| | ||||| | | || ||||| | || || Sbjct 146268 TAAAAAGAAAGCTGACTGGGCCTTGCGGTGGATTGGGGACAGAGAAGCAACATATGGTGA 146209 Query 42701 GAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCAT 42760 | | ||||| ||| | || || || || |||||||| || || | || || ||||| Sbjct 146208 ACGTGTTGTAGCTTTTGCGGCTGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCAT 146149 Query 42761 CTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCA 42819 |||||||||||| | |||| | ||||| || | || || || || ||||| || | Sbjct 146148 ATTCTGGCTCAAGAAACGAGGT-TTAATGCCTGGGTTAACTTTTTCCAATGAACTTATTA 146090 Query 42820 GCAGGGACGAGGGGCTGCATAGGGACTTTGCCTG 42853 | || || ||||| |||| | || |||||||| Sbjct 146089 GTAGAGATGAGGGTTTGCACTGTGATTTTGCCTG 146056 >seq100634 Length=30925 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 ||| ||||| || |||||||||||||| || || ||||||| | |||||| ||| Sbjct 12758 CATAAAGAGATCCGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGCTCTTCCTT 12817 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 |||||||||||| |||| || | || ||||||| || | |||||| ||||||| ||| Sbjct 12818 CCCAGTGTTCTTCTTCAGGTCAAGGAATTCAAAGATATCTAAGTGCCATGGCTCCAAGTA 12877 Query 245131 GACAGCGAGGGCGCCGGGCCGCT 245153 || || | || || ||||||| Sbjct 12878 GATGGCAAATGCCCCTGGCCGCT 12900 >seq14936 Length=40044 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG 42773 ||| | || || || || || |||||||||||| | || || | || |||||||| ||| Sbjct 20663 TTTGCTGCTGTGGAAGGGATTTTCTTCTCGGGCTCTTTTGCTGCTATATTCTGGCTTAAG 20604 Query 42774 CAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| |||| | ||||| || ||||| ||||| || |||||||||||||| || |||| Sbjct 20603 AAGAGAGGTCTT-ATGCCTGGTCTCACTTTCTCCAATGAACTCATCAGCAGAGATGAGG 20546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941061032705360