Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2532 104 2e-17 seq20275 100 3e-16 seq1233 91.5 1e-13 >seq2532 Length=66247 Score = 104 bits (114), Expect = 2e-17 Identities = 272/416 (65%), Gaps = 22/416 (5%) Strand=Plus/Plus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 |||||| | ||||| | ||| ||||| |||||||||| |||| | ||| || || Sbjct 36561 AGTGGCCCAATATGATTCAAGTATATGTGAGCATCTCCCAGAATGTGTACAAAATCACCT 36620 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 | | || || | | ||||||| ||| || || | |||||||| ||||||||||| Sbjct 36621 GACTTTAGGCCTGGGATGTGAGCAATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTG 36680 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 || | || | ||||||||||| | | ||| || || ||||| |||||||||| Sbjct 36681 AATGACACCTGGAGGCCCATGTCTCCACATCACTGGTATAGTTGACAAAAAAGCTCACCA 36740 Query 20351 TCAGCTACATAAAATTG--ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGT 20408 | |||||| || || | | | || || | || || || ||||||| | | | Sbjct 36741 TTCAATACATAGAACTGGTAGAGAGCA--TGGTATGGAGGCAGTGCCATCAGAGGAAGAT 36798 Query 20409 CCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAAT 20468 | || ||||| | |||||||||||| ||||| || | || || |||| || Sbjct 36799 CTTTAGGATTCCAAGTACACATAATGATCCTTCTGTCATCAGGGTTGGTTTTGGTT---G 36855 Query 20469 CCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGT 20528 || ||||| | || || || | ||| || | | | || || Sbjct 36856 CCTCAATG---------------ACTCCTTGCCCAGAATAATCTGTGTTCATCTCTTTGT 36900 Query 20529 ACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCC 20584 | | |||||| | || |||||||||||||| || || ||||||||||| || ||| Sbjct 36901 ATTCTGCCCCACAATGTCTCCACTGGAAACCATACACTGGTCCCAAATCTCCTTCC 36956 >seq20275 Length=61036 Score = 100 bits (110), Expect = 3e-16 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || |||||||||| ||| || || | |||| ||| ||||| ||||| || || Sbjct 38069 AGGCCTGTGACATGAGCAATCATGTAGGTGAGCAGGGCATAACTGGCGATGTTGAACGGC 38128 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC-GTCAGC 20355 || || | ||||||||||| || | ||| ||||||||||| ||||||||||| |||| Sbjct 38129 ACCCCGAGGCCCATGTCTCCAGAGCGCTGGTACAGCTGACAAGAAAGCTCACCATTCAG- 38187 Query 20356 TACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 ||| || || || || | || || || || || ||||||| Sbjct 38188 TACGTAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATCA 38231 >seq1233 Length=18904 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/240 (69%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 20198 TGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGC 20257 || |||||||||| ||||||| ||| || || || | || | |||| |||| | | Sbjct 13793 TGAGCATCTCCCAGTGTGTGAACAAAATCACCTGGCTTCAGGACTGTAATGTGAGTGATC 13734 Query 20258 ATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCA-AACCCATGTCTCC 20316 || || || | |||||||| ||||||||||| || |||| | | ||| ||||| Sbjct 13733 ATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAACATCACTCTGAGGTCACATATCTCC 13674 Query 20317 CGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAA 20376 || ||| || | |||||| ||||||||||| | |||||| ||||| || | Sbjct 13673 AGATTGCTGGTATAACTGACAAGAAAGCTCACCATTCCATACATAGAATTGGCAGAGAGT 13614 Query 20377 GTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGAT 20436 ||| || || || || ||||||| | | || || ||||| | ||||||||| || Sbjct 13613 GTGGCATGGAGGTAGAGCCATCAGAGGAAGATCTTTAGGATTCCAAGAACACATAATAAT 13554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439840623979240