Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq34511 426 2e-114 seq92824 334 9e-87 seq14936 113 5e-20 seq24704 109 6e-19 seq6562 105 7e-18 seq100634 93.3 5e-14 >seq34511 Length=68903 Score = 426 bits (472), Expect = 2e-114 Identities = 657/928 (71%), Gaps = 21/928 (2%) Strand=Plus/Plus Query 18623 CATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTC 18680 ||||||| | |||||||||||| | | || || ||| |||||| || | |||||||| Sbjct 59400 CATCCAAGGTAAAAGAATTCTCAGC--TGGACTTGACATCACTCCCGTTCTCTGATATTC 59457 Query 18681 GGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATC 18740 | ||||| || |||||||| || ||||| || || |||| ||| ||||||||||| Sbjct 59458 TCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCGATGAGATATTATCCATAAAATC 59517 Query 18741 AAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGC 18800 ||||||||||| | | || || || | || |||| ||| || | | ||| || || Sbjct 59518 AAATGGATTTTCTGCTCTAAGAATCTTGCTAAAACCTAGTTCCAACATAACTCTGTCTGC 59577 Query 18801 TACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAG 18860 |||||||| ||| || ||||| | | ||||||||||| || || || ||||||| Sbjct 59578 TACAAATTCAATGTACTGCTTCATTAAAGTGCAATTCATTCCAATCAACTTTACAGGTAA 59637 Query 18861 TGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCT 18920 || || || | ||| || |||||||| || || || || || || | ||| | Sbjct 59638 AGCTTCAGTTAAAAACTCCTGTTCTATTTTAACAGCATCG---ATGATTTCTTTTACTTT 59694 Query 18921 ATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAG 18980 ||||| ||| || || | ||||| ||||| ||||| ||||||||||| || | Sbjct 59695 TTCTTCTGAAGGCTTGTGTACCATGTGTTTGAACATTAAACAGGCAAAATCACAGTGCAA 59754 Query 18981 TCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttt 19040 ||||| |||||||| || | ||| || ||||| ||||| |||||||| | ||| ||| Sbjct 59755 ACCCTCATCTCTACTAATAAGTTCCTTGGAAAAAGTTAATCCAGGCATTAAGTCTCATTT 59814 Query 19041 ttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAA 19100 |||| ||||||||| || ||||| || ||||||| ||| || ||||| || |||||||| Sbjct 59815 CTTTAGCCAGAATATGGATGCAAAAGAACCAGAAAGGAAGATTCCTTCAACAGCTGCAAA 59874 Query 19101 AGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATC 19160 ||| || || | ||||| | || || | | ||||||| || ||||| || Sbjct 59875 AGCTACAAG----ACGCCATATGTTGCCTCTCTGTCCCCAATCCATCGCAACGCCCAGTC 59930 Query 19161 AGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATC 19220 ||| |||||||| ||||| || | | || | | ||| | ||| | || | || | Sbjct 59931 AGCTTTCTTTTTAACACAAGGTAGCATTTCAAAGGCATTGA--AGAGAAATTCCCTTTTT 59988 Query 19221 T-GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTA 19279 | | || |||| ||| | || || | | ||| |||||||| ||| || ||||| | Sbjct 59989 TGGGGTCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAACATGTATGTTTTCCA 60048 Query 19280 TAGCCATCTGAAATCCGTAAAAACA-TCTTGCTTCTGTTATCTGTACTTCACTACAAAAT 19338 |||| || || || || | ||||| | ||||| | | ||||||||| | || Sbjct 60049 TAGCAATTTGGAAGCC--AGAAACAGGCGAGCTTCAGCGACCTGTACTTCTTGGCTGAAC 60106 Query 19339 CTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGT 19398 || |||||||||||||||||||| |||||||| |||||||| || ||||| ||||| Sbjct 60107 TGCTCCACCAAATTTTCATTAACTATGCCATCACTTGCTGCAAAGAAAGCTAACACATG- 60165 Query 19399 TTAATAAAATGTTTTTCATCT--GAGGTTAATGTATTCCAATCATTAATATCTTTAGATA 19456 ||| | || |||| ||| || | | ||| | ||| | | |||||| ||||| | Sbjct 60166 -AGATATGAAGTATTTCTTCTTAGACTTCAGTGTTTCCCAGTGCTGAATATCCTTAGAGA 60224 Query 19457 AATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATAT 19516 ||| || || ||| |||||| || || |||| |||||| |||||||||| ||| |||| Sbjct 60225 GATCCACCTCCTCAGTTGTCCAGAAGGAGGCCTTTGCTTTCTTATACATGTGCCAAATAT 60284 Query 19517 CACGATATTGTATAGGAAATATAACAAA 19544 || | || || || || || |||||||| Sbjct 60285 CATGGTACTGAATGGGGAAGATAACAAA 60312 >seq92824 Length=186084 Score = 334 bits (370), Expect = 9e-87 Identities = 491/692 (71%), Gaps = 2/692 (0%) Strand=Plus/Plus Query 18854 CAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGAT-ATAATAGAT 18912 |||| | || || || | |||||| |||||||| | || || | |||| ||||| Sbjct 145949 CAGGCAAAGCTTCAGTCAAAAATTCCTGTTCTATTCTAACAGCAT-TGATGATAATTTCC 146007 Query 18913 ACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCA 18972 ||| | ||| | ||| || || || ||||| ||||| ||||| ||||||||| Sbjct 146008 TTTACTTTTTCTGCTGAAGGCTTGTGTACCAGGTGTTTGAACATTAAACAGGCAAAATCA 146067 Query 18973 CAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGT 19032 || || | ||||| |||||||| || | |||||| ||||| ||||| |||||||| | Sbjct 146068 CAGTGCAAACCCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAACCCAGGCATTAAA 146127 Query 19033 CCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACT 19092 |||| ||| || | ||||||||| || ||||| || ||||||||||| || ||||| || Sbjct 146128 CCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACA 146187 Query 19093 GCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGT 19152 || |||||||| || | | ||| ||||| | || || | | |||||| || Sbjct 146188 GCCGCAAAAGCTACAACACGTTCACCATATGTTGCTTCTCTGTCCCCAATCCACCGCAAG 146247 Query 19153 GCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATA 19212 ||||| ||||| |||||||| ||||| |||| || || || | ||| || ||| | Sbjct 146248 GCCCAGTCAGCTTTCTTTTTAACACAAGGCAGCGTTTCAATGGCATTGAAGAGAAATTCT 146307 Query 19213 CGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATA 19272 | || | | || |||| ||| | || || | | ||| |||||||| ||||| || Sbjct 146308 CTTTCTTTGGGGTCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATG 146367 Query 19273 TTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTA 19332 ||||| ||||| || || || || || ||||| | ||||| || | ||||||||| Sbjct 146368 TTTTCCATAGCAATTTGGAAGCCATAGAAACAGCGAGCTTCAGTCACCTGTACTTCTTGG 146427 Query 19333 CAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAAT 19392 | || | || |||||||||||||| ||||| |||||||| |||||||| || ||||| Sbjct 146428 CTGAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCTAAC 146487 Query 19393 ACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTA 19452 | || || || | ||| || || | | | ||| | ||| | | |||||| ||| Sbjct 146488 TCGTGAGATATGAAGTATTTCTCCTCAGGCTTCAGTGTTTCCCAGTGCTGAATATCCTTA 146547 Query 19453 GATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCAT 19512 || | ||| || || ||| | ||||| || || ||||||||||| |||||||||| ||| Sbjct 146548 GAGAGATCCACCTCCTCAGCCGTCCAGAAGGAGGCCTCTGCTTTCTTATACATGTGCCAA 146607 Query 19513 ATATCACGATATTGTATAGGAAATATAACAAA 19544 || ||| | || || || || || || || || Sbjct 146608 ATGTCATGGTACTGAATGGGGAAGATGACGAA 146639 >seq14936 Length=40044 Score = 113 bits (124), Expect = 5e-20 Identities = 108/137 (79%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||| || ||||| || | Sbjct 20546 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGACCAGGCATAAGACCTCTCTTCT 20605 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGC-AAAA 19101 | | ||||||||||| |||||| || || || ||||| || ||||| || || || |||| Sbjct 20606 TAAGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAAAA 20665 Query 19102 GCAACTAGTCTTTCTCC 19118 ||||| | ||||||||| Sbjct 20666 GCAACCACTCTTTCTCC 20682 >seq24704 Length=62651 Score = 109 bits (120), Expect = 6e-19 Identities = 104/131 (79%), Gaps = 4/131 (3%) Strand=Plus/Minus Query 18623 CATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTC 18680 ||||||| | |||||||||||| || || || ||| ||||||||| | |||||||| Sbjct 14442 CATCCAAGGTAAAAGAATTCTCAG--TTGGACTTGACATCACTCCCATTCTCTGATATTC 14385 Query 18681 GGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATC 18740 | ||||| || |||||||| || ||||| || || ||||| ||| ||||||||||| Sbjct 14384 TCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCAATGAGATATTCTCCATAAAATC 14325 Query 18741 AAATGGATTTT 18751 ||||||||||| Sbjct 14324 AAATGGATTTT 14314 >seq6562 Length=41486 Score = 105 bits (116), Expect = 7e-18 Identities = 126/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||| || || | ||| ||| |||| || | ||| || |||| Sbjct 2100 TCCAACCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 2041 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||||||||||||||| ||||| ||||||||||||||||| | | || | Sbjct 2040 TCAAAGATTGACTCTGATCAATGAATGCCCCTCTATCAGCTGCCATCTTGAGAACAGTTT 1981 Query 47170 TTTGTGGTATCT-CCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | |||| || | |||| || || ||||| | || || | |||||| || Sbjct 1980 TCTGTGAGATTTCCCCACACAGTCTTATAGAGCTGCTTCAGGTCTTCAGG 1931 >seq100634 Length=30925 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || || || || || |||| || || || || || ||||| || ||| Sbjct 3507 TGAAATTCTCCTGACAGGACCCTCCGAGTATAAATGTTGCTGGTGTAAGGTTCGATGGAT 3566 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || ||||| |||||||| || || || ||||| | |||| | || || Sbjct 3567 TCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGCAAACTG 3626 Query 47448 TTTCTTACTCCATA 47461 ||||| | |||||| Sbjct 3627 TTTCTGATTCCATA 3640 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 48443 AATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTT 48502 ||| ||||||||| | ||||| ||| ||| | | || || || ||||| || || Sbjct 15407 AATGTAACTTCCAGTGGCTCTGATACAACTCACAGCAACTCCAATGCCACCAGCTGACTT 15466 Query 48503 AGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCAT 48562 || || || |||||| | || || || |||||||| ||||| |||||||||||| |||| Sbjct 15467 GGAAATCAGTGCACACTGCTTTAGTGTGTCATAAATGCCTTCAATACTATCATCTTTCAT 15526 Query 48563 ATTTAATAGAAAACAACTA 48581 | ||| || || |||||| Sbjct 15527 ACTTAGAAGGAAGCAACTA 15545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560157502538040