Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq34511 140 6e-28 seq32393 109 1e-18 seq53778 105 1e-17 seq55504 96.9 6e-15 seq272715 91.5 3e-13 seq1300 89.7 9e-13 seq65189 86.0 1e-11 seq100566 84.2 4e-11 >seq34511 Length=68903 Score = 140 bits (154), Expect = 6e-28 Identities = 294/429 (69%), Gaps = 16/429 (4%) Strand=Plus/Plus Query 38847 ACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAAT 38906 ||| | || || || ||||| ||||| ||||| |||| || || ||||||||||||| Sbjct 59462 ACTCTCTTCTCAAAGAAGTTGGTTTTCCCTTCCGATGAGATATTATCCATAAAATCAAAT 59521 Query 38907 GGATTTT-TGGTATTATAATATTTTTCT--CCTA--TCAATACATATAATAATCTATCGG 38961 ||||||| || | | | ||| || | |||| || | ||||| | ||| || | Sbjct 59522 GGATTTTCTGCTCTAAGAATCTTGCTAAAACCTAGTTCCA-ACATA----ACTCTGTCTG 59576 Query 38962 CCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAATGGTA 39021 | |||||||||| || || |||||| |||||||| || | || || | |||| Sbjct 59577 CTACAAATTCAATGTACTGCTTCATTAAAGTGCAATTCATTCCAATCAACTTTACAGGTA 59636 Query 39022 ATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcataattatat 39081 | || ||| | ||| || | |||||||| ||||| | | ||| || | ||| | Sbjct 59637 AAGCTTCAGTTAAAAACTCCTGTTCTATTTTAACAGCATCGATGATT-TCTT--TTACTT 59693 Query 39082 tattttttgataatttatatttaatatgattcgcatataGTAAACATGCAAAATCCGTAT 39141 | | || ||| || | | || || || | | || |||||| |||||||| | Sbjct 59694 TTTCTTCTGAAGGCTTGTGTACCATGTGTTT-GAACAT--TAAACAGGCAAAATCACAGT 59750 Query 39142 GTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTC 39201 | ||||| || || ||| |||| ||| || |||||||||||| |||||||| ||| Sbjct 59751 GCAAACCCTCATCTCTACTAATAAGTTCCTTGGAAAAAGTTAATCCAGGCATTAAGTCTC 59810 Query 39202 TCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACG 39261 || || ||||| ||||| ||||||||| || ||||| ||| || || || ||| | Sbjct 59811 ATTTCTTTAGCCAGAATATGGATGCAAAAGAACCAGAAAGGAAGATTCCTTCAACAGCTG 59870 Query 39262 CAAATGCTA 39270 |||| |||| Sbjct 59871 CAAAAGCTA 59879 >seq32393 Length=14028 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || |||| | | | | |||| ||| || ||||||||||| ||||| Sbjct 8320 AATGTTGTAGTCAGAAAAAGTACATCCACCTTCCAGTTGCTTCCCAGCAAAAATCAATCT 8261 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| ||||| || || ||||| |||||| |||| || |||| ||||| ||||| Sbjct 8260 TTGTTGATCAGGGGGAATACCTTCCTTATCTGGTATCTTGGTTTTGACATTTTCAATAGT 8201 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||| | || || || | || ||||| || || | || || || ||||| ||||| Sbjct 8200 ATCTGATGGTTTGACCTCAGGGGTGATGGTCTTCCCCCTCAAAGTCTTTATGAAAATCTG 8141 Query 172067 CAT 172069 ||| Sbjct 8140 CAT 8138 >seq53778 Length=21761 Score = 105 bits (116), Expect = 1e-17 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || ||||| |||| ||| | || |||| || || ||||||||||| ||||| Sbjct 17415 AATGTTGTAGTCTGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAAATCAATCT 17474 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| ||||| || | |||| ||||||||||| || ||| ||||| ||||| Sbjct 17475 TTGTTGATCAGGGGGAGTACCTTTCTTATCTTGTATCTTGGCTTTGACATTTTCAATAGT 17534 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| |||| ||| | || || || ||||| || || || || | || | ||| ||||| Sbjct 17535 ATCCGACGGTTCAATCTCAAGGGTGATGGTCTTTCCTGTCAAAATCTTCACGAAAATCTG 17594 Query 172067 C 172067 | Sbjct 17595 C 17595 >seq55504 Length=131191 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||| | || || | |||| | ||| || |||| || || ||||||||||| ||||| Sbjct 32778 AATACTGTAGTCACACAAAGTACTTTCATCTTCCAGTTACTTGCCAGCAAAAATAAATCT 32719 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| ||||| || || ||||| |||||||||| || ||| ||||| ||||| Sbjct 32718 TTGTTGATCAGGGGGAATACCTTCATTATCTTGTACATTGGGTTTGACATTTTCAATAGT 32659 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| | || || || || || ||| | || | || || ||||| ||||| ||||| Sbjct 32658 ATCCAGTGGTTTGACCTCAAGGGTGATGATCTTCTCCGTCAAAGTTTTTATGAAAATCTG 32599 Query 172067 CAT 172069 ||| Sbjct 32598 CAT 32596 >seq272715 Length=527 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || || ||||||| || || | || | || | || | |||||| |||||||| Sbjct 250 ATGATGCCACCTCGCAGACGAAGCACCAGGTGCAGGGTGGACTCTTTCTGGATATTATAG 309 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 ||||| | || || | || |||| ||||| || || ||||| || | ||| |||||| Sbjct 310 TCTGACAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAAATCAAACGCTGCTGGTCA 369 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || || || || ||||| |||||| ||| ||||| || || || | Sbjct 370 GGTGGAATGCCCTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGC 429 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| ||||| || || || | || || | || |||||||| Sbjct 430 TCGACCTCTAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 482 >seq1300 Length=25519 Score = 89.7 bits (98), Expect = 9e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| |||||||||||| | |||| ||| | || |||| | || ||| Sbjct 24775 GTAGACTCTTTCTGAATATTATAATCAGCCAAAGTACGTCCTTCTTCCAGCTCCTTGCCA 24834 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 | ||| | ||||| || || ||||| || || ||||| |||||||| || || || Sbjct 24835 GAAAACACCAATCTTTGATGATCAGGAGGAATACCTTCCTTATCTTGAATCTTGGCCTTG 24894 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 || | || ||||| || |||| || || || || |||||||| || | || || Sbjct 24895 ACTGTTTCAATTGTATCAGATAATTCCACATCAAGGGTGATGGTTTTCCCCATCAAAGTC 24954 Query 172053 TTAATGAATATCTGCAT 172069 || | ||||||||||| Sbjct 24955 TTCACAAATATCTGCAT 24971 >seq65189 Length=19200 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||| | ||| || || || || |||| | | | || || | || || || Sbjct 16171 GTAGACTCTGTCTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCTAGCTGCTTGCCC 16230 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 |||| || ||||| ||||||||||| || || ||||| ||||| ||||| || || Sbjct 16231 ACAAACATCAATCTTTGTTGGTCAGGAGGAATACCTTCCTTATCATGTATCTTGGCCTTG 16290 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 ||||| |||||||| || | || || || || || |||||||| || | || || Sbjct 16291 ACATTTTCAATAGTATCAGATGGTTTGACATCAAGGGTGATGGTTTTCCCCATCAAAGTC 16350 Query 172053 TTAATGAATATCTGCAT 172069 || | || |||||||| Sbjct 16351 TTCACAAAAATCTGCAT 16367 >seq100566 Length=62511 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || || ||||||||||| |||||||| ||||| || || || ||||| || Sbjct 21260 TCTTCCAGCTGCTTCCCAGCAAAAATCAATCTCTGCTGGTCTGGAGGGATGCCTTCCTTG 21319 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || ||||| || ||||| || || || | |||||||| || || ||| Sbjct 21320 TCATGAATTTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATG 21379 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| || || || | || ||||||||| Sbjct 21380 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 21415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901993922203800