Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq15296 95.1 9e-15 seq2532 89.7 4e-13 seq20275 86.0 5e-12 >seq15296 Length=69570 Score = 95.1 bits (104), Expect = 9e-15 Identities = 466/730 (64%), Gaps = 40/730 (5%) Strand=Plus/Plus Query 111574 TCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAATTCA--AAGTCATCAGCAACAA 111631 ||||| || ||||| |||||||| | || || || | ||| ||||| ||||| | Sbjct 63844 TCCATTTTAATAGCTGGATGAGGGTTGTAGTTTTCAA--TCAGGAAGTCCTCAGCCTTGA 63901 Query 111632 AATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTTC 111691 |||| |||||| ||||| | | |||||| || || || || || | | | | Sbjct 63902 AATCATCAATGGTTTCAACTTTGTGAAGAATTTTGAGCTTAGGGAAAGGTCTTGATTCTT 63961 Query 111692 GGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATAC 111751 | || ||| | || || | | || ||||| || | | || |||||||| | | Sbjct 63962 GCTGAATCTGAATTTTCAATGACACAATATGATTGAAGTGCATGTGAGCATCTCCCAGAG 64021 Query 111752 AATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGAC 111811 || | || || | |||| || || |||| ||| ||||||||||| |||||||| Sbjct 64022 TGTGTACAAAATCACCTGGCTTCAGGCCTGTGACGTGAGCAATCATGTAGGTGAGTAGGG 64081 Query 111812 TGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTTGATATAGCT 111871 |||| |||||||| |||| ||||| | ||||||| ||||||| Sbjct 64082 AAGAACTGGCAATGTTGAATGACACACTGAAGCCCATA--------------GTATAGCT 64127 Query 111872 GACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCAATG 111931 |||| || || | | | | || || || || || || |||| || ||||||| || Sbjct 64128 GACAAGAAAGCTCACCATTCAATACGTAGAACTGGCAGAGAGCATGGCATGGAGGCAGTG 64187 Query 111932 CCATCCCA-----TTCATAAAGGGTCCCCATGCACACATGATCATCCTTCTGCTGTAGCG 111986 ||||| | ||| | | || || |||||||| || ||||||||| | | Sbjct 64188 CCATCAGAGGAAGTTCTTTA--GGATTTCAAGCACACATAATGATCCTTCTGTCATCAGG 64245 Query 111987 ATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATC 112046 || ||| || || ||||| ||| | || || | |||| |||| |||||| Sbjct 64246 GTTGGTTTCGATTGTGTCCATGACTTTCTGTACTTGATCCACTCCTTGCCCAGAATAATC 64305 Query 112047 CGCCTGACATC-CAGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGGCC 112105 | | |||| | || || | |||| | |||||||| || ||| | | || | Sbjct 64306 TGTGT-TCATCTCTTTGCATTCAGTCCCAAAATGTCTCCACAGG-CGCCACACACTGGTC 64363 Query 112106 CCAGATCTCC--CGGGGCTGTATCTGGAAATTGCTCTCTATTCAACAAATCACTTCTA-A 112162 ||| |||||| | ||| || || ||| | | ||| || || || | | Sbjct 64364 CCAAATCTCCTTCCTTACTGGTAGTG--AACCGCTGCTTGTCCAAAAAGTC---TCAAGA 64418 Query 112163 T--ATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGG-ATC 112219 | || || || ||| || |||| |||||| | || |||||| | |||||||||| ||| Sbjct 64419 TCCATCAGCATCCCAGATTTTCAGTCCTTTGGCAGAGAACTCTTTAGCATTTGTGGAATC 64478 Query 112220 CTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTA 112279 || ||| |||||| | || | |||| || || |||||| |||| || || || | Sbjct 64479 CT-TAACAAACCACATCAGGCCCTCCAGCACACCCTTCCAGAACACAAGCTTGGTTGTCA 64537 Query 112280 GCAGTGGAAA 112289 ||| ||||| Sbjct 64538 GCAAAGGAAA 64547 >seq2532 Length=66247 Score = 89.7 bits (98), Expect = 4e-13 Identities = 430/670 (64%), Gaps = 39/670 (6%) Strand=Plus/Plus Query 111631 AAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGGTAGGCTTT 111690 ||||| ||| || ||||| || | |||||| || ||||| || || | || | | Sbjct 36483 AAATCATCAGTGGTTTCAACTTTTTGAAGAATTTTGAGCTTTGGGAAAGGTCTTGGTTCT 36542 Query 111691 CGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCATCTCCTATA 111750 | || ||| | || | ||| || ||||| || || | || |||||||| | | Sbjct 36543 TGCTGAATCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATGTGAGCATCTCCCAGA 36602 Query 111751 CAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATGTGAGTAGA 111810 || | || || | | || | || | |||||| ||||||||||| ||||| || Sbjct 36603 ATGTGTACAAAATCACCTGACTTTAGGCCTGGGATGTGAGCAATCATGTAGGTGAGCAGG 36662 Query 111811 CTGTAACTAGCAATGTTAAATGGCACACCT--AGGCCCATATCTCCCGATCTTTGATATA 111868 ||||| |||||||| |||| |||||| |||||||| ||||| ||| || |||| Sbjct 36663 GAATAACTGGCAATGTTGAATG--ACACCTGGAGGCCCATGTCTCCACATCACTGGTATA 36720 Query 111869 GCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAGGAGGCA 111928 | ||||| | || | | | | ||||| || || | || |||| | ||||||| Sbjct 36721 GTTGACAAAAAAGCTCACCATTCAATACATAGAACTGGTAGAGAGCATGGTATGGAGGCA 36780 Query 111929 ATGCCATCCCATTCA----TAAAGGGTCCCCATGCACACATGATCATCCTTCTGCTGTAG 111984 ||||||| | | | ||| | ||| | |||||| || |||||||| | Sbjct 36781 GTGCCATCAGAGGAAGATCTTTAGGAT-TCCAAGTACACATAATGATCCTTCT------G 36833 Query 111985 CGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAGTATAA 112044 || | | | || || || | |||| || | |||| |||| |||| Sbjct 36834 TCATCAGGGT--TGGTTTTGGTTGCC--TCAA----TG----ACTCCTTGCCCAGAATAA 36881 Query 112045 TCCGCCTGACATC-CAGTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCATAAATAGG 112103 || | | |||| | ||||| ||||||| | |||||||| ||||| ||||| | || Sbjct 36882 TCTGTGT-TCATCTCTTTGTATTCTGCCCCACAATGTCTCCACTGGAAACCATACACTGG 36940 Query 112104 CCCCAGATCTCC--CGGGGCTGTATCTGGAAATTGCTCTCTATTCAACAAATCACTTCTA 112161 |||| |||||| | ||| || || || | | ||| || || || | Sbjct 36941 TCCCAAATCTCCTTCCTCCCTGGTAGTG--AACCCCTGCTTGTCCAAAAAGTC---TCGA 36995 Query 112162 -AT--ATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGAT 112218 || || | || ||| || |||||| |||| | || | |||| | ||||||||||| Sbjct 36996 GATCCATTGGCATCCCAGATTTTCACTTCTTTGGCAGAGAGCTCTTTAGCATTTGTGGAA 37055 Query 112219 CCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTT 112278 || |||||||||| |||| || |||| | || |||||| |||| || || || Sbjct 37056 CCCTTAATAAACCACAGCAGTTTCTCCAGCTCACCCTTCCAGAACACAGGCTTGGTTGTC 37115 Query 112279 AGCAGTGGAA 112288 |||| |||| Sbjct 37116 AGCAAAGGAA 37125 >seq20275 Length=61036 Score = 86.0 bits (94), Expect = 5e-12 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||| || ||||||||||| ||||| || ||||| || ||||| || ||||| Sbjct 38072 CCTGTGACATGAGCAATCATGTAGGTGAGCAGGGCATAACTGGCGATGTTGAACGGCACC 38131 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTT---TATTTTGTGAC 111894 || |||||||| ||||| || | || || |||||||| || || | ||| || Sbjct 38132 CCGAGGCCCATGTCTCCAGAGCGCTGGTACAGCTGACAAGAAAGCTCACCATTCAGT--- 38188 Query 111895 ACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || || |||| || ||||||| ||||||| Sbjct 38189 ACGTAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATC 38230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390619019819893