Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2532 248 7e-61 seq15296 230 2e-55 seq25758 170 2e-37 seq109705 143 2e-29 seq20275 138 9e-28 seq84504 91.5 1e-13 >seq2532 Length=66247 Score = 248 bits (274), Expect = 7e-61 Identities = 432/627 (69%), Gaps = 25/627 (4%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| ||| || || || | |||| | ||||| || | | | || || || Sbjct 36524 TGGGAAAGG-TCTTGGTTCTTGCTGAATCTGAATTTTCAGTGGCCCAATATGATTCAAGT 36582 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | |||||| |||||||| |||| ||||| || || | | ||| || | || ||||| Sbjct 36583 ATATGTGAGCATCTCCCAGAATGTGTACAAAATCACCTGACTTTAGGCCTGGGATGTGAG 36642 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||| ||||| || || || ||||| ||||| || | ||| ||| ||||||| Sbjct 36643 CAATCATGTAGGTGAGCAGGGAATAACTGGCAATGTTGAATGACACCTGGAGGCCCATGT 36702 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30077 | || | | |||||| || ||||| | ||||| || | || || ||||| | | Sbjct 36703 CTCCACATCACTGGTATAGTTGACAAAAAAGCTCACCATTCAATACATAGAACTGGTAGA 36762 Query 30078 TGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACA 30134 || ||| | ||||| || ||||| |||| ||| ||||| || ||||| | |||| Sbjct 36763 GAGCATGGTATGGAGGCAGTGCCATCAGAGG---AAGATCTTTAGGATTCCAAGTACACA 36819 Query 30135 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 30194 ||||| | ||||| || |||||| | || | ||| || | Sbjct 36820 TAATGATCCTTCTGTCATCAGGGTTGGTTTTGGT----------------TGC--CTCAA 36861 Query 30195 CCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 30254 || || ||| || || |||| |||| || |||| ||||| || |||| |||| Sbjct 36862 TGACTCCTTGCCCAGAATAATCTGTGTTCATCTCTTTGTATTCTGCCCCACAATGTCTCC 36921 Query 30255 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30314 ||||||| || ||||| ||||||| ||||| || |||||| ||| ||| ||||| Sbjct 36922 ACTGGAAACCATACACTGGTCCCAAATCTCCTTCCTCCCTGGTAGTGAACCCCTGCTTGT 36981 Query 30315 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTT 30374 |||||||||||| || || ||||| |||||||| || || | || |||||||||||| Sbjct 36982 CCAAAAAGTCTCGAGATCCATTGGCATCCCAGATTTTCACTTCTTTGGCAGAGAGCTCTT 37041 Query 30375 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30434 | | |||||||| || | | ||||||||||| | ||||| | ||||||| || | Sbjct 37042 TAGCATTTGTGGAACCCTTAATAAACCACAGCAGTTTCTCCAGCTCACCCTTCCAGAACA 37101 Query 30435 CCCTCTTGGTCGTGAGGAGGGGAAACT 30461 | |||||| || || | |||| || Sbjct 37102 CAGGCTTGGTTGTCAGCAAAGGAAGCT 37128 >seq15296 Length=69570 Score = 230 bits (254), Expect = 2e-55 Identities = 435/636 (68%), Gaps = 23/636 (4%) Strand=Plus/Plus Query 29902 GTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29961 |||||| |||||||| |||| ||||| || || || | || || ||||||||||| || Sbjct 64005 GTGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACGTGAGCAAT 64064 Query 29962 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 30021 |||||| ||||| || || | ||||| ||||| || | || | || ||||| Sbjct 64065 CATGTAGGTGAGTAGGGAAGAACTGGCAATGTTGAATGACACACTGAAGCCCATA----- 64119 Query 30022 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGC 30081 ||| |||||||| || ||||| || | ||||| ||||| || | || Sbjct 64120 ---------GTATAGCTGACAAGAAAGCTCACCATTCAATACGTAGAACTGGCAGAGAGC 64170 Query 30082 GTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGT-CTTTGGGGTTCCAGGCGCACACGAT 30138 ||||| ||||| || ||||| |||| |||| |||| || || || || |||| || Sbjct 64171 ATGGCATGGAGGCAGTGCCATCAGAGG---AAGTTCTTTAGGATTTCAAGCACACATAAT 64227 Query 30139 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30198 ||| | ||||| || |||||| | ||| ||||| | | || || | |||||||| Sbjct 64228 GATCCTTCTGTCATCAGGGTTGGTTTCGATTGTGTCCATGACTTTCTGTACTTGATCCAC 64287 Query 30199 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30258 || ||| || || |||| |||| || || | || | || ||||| |||||| | Sbjct 64288 TCCTTGCCCAGAATAATCTGTGTTCATCTCTTTGCATTCAGTCCCAAAATGTCTCCACAG 64347 Query 30259 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30318 | || |||| ||||||| ||||| || | ||| ||| | | ||||||||| Sbjct 64348 GCGCCAC-ACACTGGTCCCAAATCTCCTTCCTTACTGGTAGTGAACCGCTGCTTGTCCAA 64406 Query 30319 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGA 30378 |||||||| || || | || |||||||| || | || || |||||| |||||| | Sbjct 64407 AAAGTCTCAAGATCCATCAGCATCCCAGATTTTCAGTCCTTTGGCAGAGAACTCTTTAGC 64466 Query 30379 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30438 |||||||| | | || ||||||| ||| |||||| || ||||||| || || Sbjct 64467 ATTTGTGGAATCCTTAACAAACCACATCAGGCCCTCCAGCACACCCTTCCAGAACACAAG 64526 Query 30439 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTGGCCTGAGAACCAAACAC 30498 |||||| || || | ||||||| || |||| | | | ||| || | ||||||| Sbjct 64527 CTTGGTTGTCAGCAAAGGAAACTCACCTCGGAGGTTGCAGCGGGCTTGCAAGCCAAACAT 64586 Query 30499 GGACA-AGACTCCCGTGCCCGTCCTGTCTCCCCTGC 30533 ||||| || | || |||||||| | ||| || ||| Sbjct 64587 GGACACAGTC-CCAGTGCCCGTGCAGTCCTCCTTGC 64621 >seq25758 Length=7456 Score = 170 bits (188), Expect = 2e-37 Identities = 300/433 (69%), Gaps = 3/433 (1%) Strand=Plus/Minus Query 30029 TGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCAC 30088 ||||||| |||| | || || || || | || || ||||| || | || | ||| Sbjct 2816 TGGTAGACCTGATAAGAAAG-TCGCCATTCAATACATAGAACTGGCAGAGAGCATAGCAT 2758 Query 30089 GGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTG 30148 ||||| || ||||| || | ||| | ||||| | |||| ||||| | || Sbjct 2757 GGAGGCAGTGCCATCAGAGAATGATTTTTACGATTCCAAGAACACATAATGATCCTT-TG 2699 Query 30149 TCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCC 30208 || || |||||| | |||| ||| ||| | || || || |||||||| || ||| Sbjct 2698 TCATCAGGGTTGGTTTTGATTGTGTCAACGACTTTCTGTAGTTGATCCACTCCTTTCCTG 2639 Query 30209 GAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTAC 30268 || || |||| | || || | || ||||| || ||||| ||||||||||| || ||| Sbjct 2638 GAATAATCTGTGTTTATCTCTTTATATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAC 2579 Query 30269 ACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTG 30328 | ||||||| ||||| ||||||||| ||| ||| |||| |||||||||||| Sbjct 2578 AT-GGTCCCAAATCTCCTTCTTCCCTGGTAGTGAACCCCTTCTTATCCAAAAAGTCTTGA 2520 Query 30329 GAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGAC 30388 | || ||||| |||| ||| || || | || ||||||||||||| | |||||||| Sbjct 2519 GGTCCATTGGCATCCCCGATTTTCACTGCTTTGGCAGAGAGCTCTTTAGCATTTGTGGAA 2460 Query 30389 CCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTG 30448 || | | ||||||| || ||||||| || ||||||| || || ||||| | || Sbjct 2459 CCATTAATAAACCACAATAGTTCCTCCAGTACACCCTTCCAGAACACATTCTTGATTGTC 2400 Query 30449 AGGAGGGGAAACT 30461 || | ||||||| Sbjct 2399 AGCAAAGGAAACT 2387 >seq109705 Length=43380 Score = 143 bits (158), Expect = 2e-29 Identities = 178/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || |||| ||||| || ||||| |||||||| || || |||| |||| || | Sbjct 31220 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGAAAGCCAAACACTGGTCACAAAT 31161 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| || || ||| ||| || |||||||||||||||||| | || ||||| | Sbjct 31160 CTCCTTCCTCTCTGGTAGTGAACCCGTTCTTGTCCAAAAAGTCTCGAAATCCATTGGCAT 31101 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGACGAAC 30400 ||||||| || || || || |||| |||||||| | |||||||| ||||| | ||| Sbjct 31100 CCCAGATTTTCACTCCTTTGGCAGACAGCTCTTTAGCATTTGTGGAACCCTCA-ATAAAC 31042 Query 30401 CACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAAC 30460 |||||||| ||||||| || ||||||| || || | ||| | || | || |||||| Sbjct 31041 CACAGCAGTTCCTCCAGCACACCCTTCCAGAACACACGGTTGATTGTAGGCAGAGGAAAC 30982 Query 30461 T 30461 | Sbjct 30981 T 30981 >seq20275 Length=61036 Score = 138 bits (152), Expect = 9e-28 Identities = 132/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || |||| ||||| || ||||| ||||||||||| || ||||| ||||||| | Sbjct 40981 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAACCATACACTGGTCCCAAAT 41040 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| || |||||| ||| ||| ||||||||||||||||| || || ||||| | Sbjct 41041 CTCCTTCCTCCCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCAT 41100 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||| || || || || ||||||||||||| | |||||||| || Sbjct 41101 CCCAGATTTTCACTCCTTTGGCAGAGAGCTCTTTAGCATTTGTGGAACC 41149 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || ||||| ||||| |||||||| ||||| || | || ||||||||||| || || Sbjct 38069 AGGCCTGTGACATGAGCAATCATGTAGGTGAGCAGGGCATAACTGGCGATGTTGAACGGC 38128 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 |||||||| |||||||| || || | |||||| |||||||| || ||||| || | Sbjct 38129 ACCCCGAGGCCCATGTCTCCAGAGCGCTGGTACAGCTGACAAGAAAGCTCACCATTCAGT 38188 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 38189 ACGTAGAACTGGCAGAGAGCATGGCATGGAGGCAGTGCCATCAG 38232 >seq84504 Length=29057 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || |||||||| |||| || ||||||||| | | ||||| |||||| || || Sbjct 22679 TTCAGTTCTCTGCTGAGAACTAAATTAATCCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 22738 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||||||||| | |||||||||| | ||||| || ||| Sbjct 22739 ATGGAGAACCAAGTCTTCTTTCCCATTATCAAGAGATTCTGTTTACCT 22786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404935200677412